Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3204 ATGGCGAGAAGAAATGAAGGATTTGCAGTGGGAATCGACCTTGGCACAACGTATTCTTGTGTTGCAGTGTGGCAGGAGCAACACAGTAGAGTGGAGATTATCCACAATGACCAGGGCAACAAAATCACACCTTCTTTTGTTGCTTTCACACAAGACCAGAGATTGCTTGGTGATGCTGCTAAAAATCAAGCTGCTACCAACCCAGAGAACACAGTCTTTGATGTTAAGAGGTTAATTGGTAGAAAATTCAGTGATCCTGTGGTTCAAAATGATATCAAGTTATGGCCATTCAAGGTTAATGCTGGGGTTAATGACAAACCCATGGTTGTTCTAACCTACAAGGGTCAGGAGAAGCGCTTTTCAGCTGAGGAAATCTCAGCTATGATTCTGATGAAAATGCGGGAAATCACGGAGGCCTATTTGCAATCAGATGTTAAGGATGTCGTTGTTACCGTACCTGCTTATTTCAACGATTCACAGCGAAAAGCCACCAAAGATGCTGCTGCTATTGCCGGCCTCAATGTGATGAGGATAATCAATGAGCCCACCGCTGCTGCTCTTGCGTATGGGCTTGACAAGAGGGCTTTTTGTGTTGGAGAGCGGAATATTTTTGTCTTTGATCTTGGTGGAGGCACTTTTGATGTGTCAATTCTTGCAATTAAGGGCAATGTCTTCCAAGTTAAGGCCACTGCTGGAAACACTCATCTTGGGGGTGAGGACATTGATAATAGAATGGTGAGTTACGCAGTAGAGGTTTTCAAGAGGAAGCACAAAGTGGACATAAGTGGGAACCCAAGAGCTCTAAGGAGGTTGCGAAGTGCTTGTGAGAGGGCAAAAAGGACACTGTCGTATGCTGTTGTTACCACCATTGAGGTAGATGCTTTGTTTGAGGGCATTGACTTCCAATCCTCAATTAGTCGCGCAAAGTTTGAGGAAATCAATTCCGATCTTTTTGTAGAGTGTATGGAGATAGCAGATAGATGTCTTGTTGATGCTAAGATGGACAAGAGTAGTGTACATGATGTTGTCCTTGTCGGCGGCTCATCTAGAATTCCCAAAGTGCAGCAGCTGTTACAGGACTTTTTCAATGGGAAGGATCTGTGTAAGTGCATCAACCCTGATGAGGCTGTTGCCTACGGTGCAGCTGTTCAGGCTGCTTTGTTGAGTAAAGACATTAAGAATGTTCCAGACTTGGTGCTGTGTGATGTCACACCACTGTCTCTAGGTTGGGGACTAATAAGAAATCAAATGGGTGTAGTGATTCCTAGGAATACTACTATTCCTGTAAAGAAGACAGAACAATTCTTCACAGAATTAGATAATCAATCCAGTGTCTTGATTGAAGTTTATGAGGGTGAGAGATCAAGAGCCAGTGACAACAACATGCTTGGTTCTTTTATTCTCTATGGCTTACCTCCTGCTCCTCGAAACCATCCTTTTGATGTGTGTTTTTCCATTGATGAAGACGGTATCCTAACTGTTTCAGCTGAGGAGAAGACCACTGGCAATTGGAATGAGATTACTATAACCAATGATAGAGAAAGACTGTCAACAGAAGAAATTAACAGATTGATTCAAGAAGCTAAGATGTACCAGGCTGAAGATAAGAAGTTCCTCAGGCAGGCCAATGCAATGAATGCTTTGGATGATTGCGTTTACAAGATGAGGAATACATTAATCAAGAAGGATACCAATTCAAAGCTTTGCTCACAAGAAAAGGAGAAGATCAGTTCTGCTATTGCCAAGGCCACAAATTTGCTTGATTATCATAACCAGCTGGATGAAGTAGATGTGCTTGAGGACTATGTGGAGGAGCTTAAGAGCAGGTTTGAGCGCATTGTGGGCAAGATTGGCTAG 1857 0.4303 MARRNEGFAVGIDLGTTYSCVAVWQEQHSRVEIIHNDQGNKITPSFVAFTQDQRLLGDAAKNQAATNPENTVFDVKRLIGRKFSDPVVQNDIKLWPFKVNAGVNDKPMVVLTYKGQEKRFSAEEISAMILMKMREITEAYLQSDVKDVVVTVPAYFNDSQRKATKDAAAIAGLNVMRIINEPTAAALAYGLDKRAFCVGERNIFVFDLGGGTFDVSILAIKGNVFQVKATAGNTHLGGEDIDNRMVSYAVEVFKRKHKVDISGNPRALRRLRSACERAKRTLSYAVVTTIEVDALFEGIDFQSSISRAKFEEINSDLFVECMEIADRCLVDAKMDKSSVHDVVLVGGSSRIPKVQQLLQDFFNGKDLCKCINPDEAVAYGAAVQAALLSKDIKNVPDLVLCDVTPLSLGWGLIRNQMGVVIPRNTTIPVKKTEQFFTELDNQSSVLIEVYEGERSRASDNNMLGSFILYGLPPAPRNHPFDVCFSIDEDGILTVSAEEKTTGNWNEITITNDRERLSTEEINRLIQEAKMYQAEDKKFLRQANAMNALDDCVYKMRNTLIKKDTNSKLCSQEKEKISSAIAKATNLLDYHNQLDEVDVLEDYVEELKSRFERIVGKIG* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 477 493 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 339 355 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 397 416 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Lja1g3204 618 PRINTS 70kDa heat shock protein signature 371 391 - -
Lja1g3204 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Lja1g3204 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lja1g3204 618 Gene3D - 194 368 - -
Lja1g3204 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 616 IPR029048 -
Lja1g3204 618 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Lja1g3204 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Lja1g3204 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Lja1g3204 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Lja1g3204 618 PANTHER HEAT SHOCK PROTEIN 70KDA 4 616 IPR013126 GO:0005524|GO:0140662
Lja1g3204 618 Gene3D - 546 618 IPR029048 -
Lja1g3204 618 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 616 - -
Lja1g3204 618 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Lja1g3204 618 Pfam Hsp70 protein 9 616 IPR013126 GO:0005524|GO:0140662
Lja1g3204 618 Gene3D Actin; Chain A, domain 4 237 320 - -
Lja1g3204 618 Gene3D - 73 128 - -
Lja1g3204 618 Gene3D - 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3204 Lja-Chr1 39607996 39610468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3204 1 617 Calmodulin-binding Proteins AT3G12580 65.751 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3204 K03283 - gmx:102667572 907.901