Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3203 ATGGGCAACTGTGGTACCAGAGAAGAATCCGCCGTCGTTTCCAATGCACAAGTTCAGCAGCTTAACCACGCGCCGTCGCTCGGCGCGTGCAGTTCCAGAACGATAACCGCCACCGGCGGAAGCGGTTTGAGCGAGAAGAAGTACACTCTGAGGCAAACTCTGAGCGAGTCCGCTTCGGATCTGAGCGAGACTTGCTCGACGCCACGCGCTAACAGCAGTTGCAGCAACAACACGCTCCTCTACACTCACGTCATCGCGTTCACGCTCTACGAGCTTGAAACCATTACCAAGAGCTTCCGTGGTGACTATATCTTGGGTGAGGGAGGGTTCGGAACTGTTTACAAAGGCTACATTGACGAGAACGTGAGGGTTGGACTCAAGTCGCTACCTGTTGCGGTTAAGGTTTTGAACAAGGAAGGGCTTCAGGGACATCGCGAGTGGCTTACGGAGGTGAATTTCTTGGGGCAACTGAGGCATCCGAATCTGGTGAAGTTGATCGGTTACTGCTGTGAAGATGATCATAGGCTGCTGGTGTATGAGTTCATGTTTCGAGGAAGTTTGGAGAATCACCTATTCAGAAAGGCAACTGCCCCTTTAACATGGGCTACAAGAATGATGATAGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTCATCTATCGCGACTTCAAAACATCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGGCTAGCTAAAGCAGGACCTCAAGGTGATGAAACCCATGTATCCACCAGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGTCACCTAACAGCTAGGAGTGATGTATATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTAACGGGAAGGAAATCGGTCGACAAGACAAGACCCGGGAAGGAACAGAGCTTGGTAGATTGGGCGCGGCCAAAGCTCAATGACAAGAGAAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAGTACTCAGTGAGAGCAGCACAGAAAGCATGTAGTTTGGCTTACTACTGCTTGAGCCAAAATCCCAAAGCGAGGCCACTAATGAGTGATGTAGTTGAGACTCTGGAACCTCTACAAAGTTCTAGTATTGGTCCTGGTGAAGTCTCGCTAACAGGATCAAATAGTGGCAGTGTGCCTTTTGCTATGAGCAAATTCTCTGACTACCGGATGCGTCACAAGTTTTCGAATAATGTTGGCCCGGGCGCTGCTTGTCGGTCTCCGAACCCGAATTGCTCACCGGGTGCTCCAGCATGCCGGGTCAGATGA 1329 0.4929 MGNCGTREESAVVSNAQVQQLNHAPSLGACSSRTITATGGSGLSEKKYTLRQTLSESASDLSETCSTPRANSSCSNNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATAPLTWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSIGPGEVSLTGSNSGSVPFAMSKFSDYRMRHKFSNNVGPGAACRSPNPNCSPGAPACRVR* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3203 442 CDD STKc_IRAK 105 379 - -
Lja1g3203 442 Pfam Protein tyrosine and serine/threonine kinase 104 376 IPR001245 GO:0004672|GO:0006468
Lja1g3203 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lja1g3203 442 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 46 430 - -
Lja1g3203 442 ProSitePatterns Protein kinases ATP-binding region signature. 105 134 IPR017441 GO:0005524
Lja1g3203 442 Gene3D Transferase(Phosphotransferase) domain 1 182 385 - -
Lja1g3203 442 Gene3D Phosphorylase Kinase; domain 1 59 181 - -
Lja1g3203 442 ProSiteProfiles Protein kinase domain profile. 99 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3203 442 PANTHER OS01G0588500 PROTEIN-RELATED 46 430 - -
Lja1g3203 442 SUPERFAMILY Protein kinase-like (PK-like) 74 377 IPR011009 -
Lja1g3203 442 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3203 Lja-Chr1 39601705 39606224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3203 52 376 Glycoside Hydrolase AT3G07070 50.915 1.26e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g3203 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3203 - - gmx:102662348 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3203 1 39601705 39606224 Lja1g3203 1 39601705 39606224 ECH