Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3201 ATGGCAGCTTGTGCTTTGTTTACTGGCGGTGTTAACACCACAGAAGAAGGCAATGTCACCAACAACAACAACAACTGTGGAAGTAGCTCAAACTCCAGCAACATGAGCAGTGAAGAACAACAACACACCCTGCTTCAAACCATGCCACAGCCTCATTCTGAGAGGAAAATGGTGAGAAAAAGAATGGCCTCAGAAATGGAACTTCATCACAACAACAACAATATCAACAACTCAACCGCCACTAGGTTCTCTAGGAGAAGCAGCACCAACATGTCCTCTATGAATTGTTCTTTACCAGCCACAGAAAAAGCAGCAGCAGCAGCAGCAACAACACCAACAACATTAGCTGCAGGTACTTGTAATAACAACAATAACTATCATTATAATAATAGTACTAACAATAACAATATCAATAACAATAATAATGGTCTTAGTCATAGTAGTACTTTGTCAAGAGATAACGTTGCTGCTGCTATTCAAATTCCAAATTACCCCACTGTGACCGTCACAACCAACTACTCCACTATGCTTCTACCTTCTTCCATTGTCAATTCCTCTGCCTCCTCCATTCCCTCTTCCACCACCATTGCTTCTCCAAACTACCATTTCCAAGGACTAGTTGAAAACCAAAACCAAAACCAAACCCAGGACCAAAACCCTGTGCCTCAAGTTTGTGGATTCTCTGGTTTACCACTGTTTCCATCTCAAAACCAAAGAAACAACAACAGAAACAGTGGTAGCAGTGGTGTTGTTGAAGTTGTTTCTGCTTCTTCTCCTTCAATGGATGATACTTCAGCAACATCTAACTGGATTGATGGAATATTGAAGGATCTCATCAACAGTTCCAACACTGTTTCCATTCCTCAACTCATCAGCAACGTGAGGGAGATCATATATCCTTGCAATCCCAACCTTGCAGTGGTTCTTGAACACAGGTTGCGCCTTCTAACAGAGTCTGCACCACCACCAAGCTCATCTGTTGAACAGAGAAAAAGGGGTTTGCCTCCACCTAATGGCATTGTTCCTAGTTTGCATTTTCCTGATCCGTCAGTTAATCAAAACATGTATTCCAATTGGGGTGTGCCTCCAATCAACAACCCCAACAACACCAACAATAACAACCCTTCAGTTTCATTGATTACTTTACCTTCTCCACCATCTACACACCAGAGTTATTCTCCATCACAAGAAAAGCAACAGCAACAGCATCAGCAGAATCAAGAGGAAGATCTTGCAGTTGCTGCATCAGCAGCAGCAGCAGCAGCTACAAGCAGTGCTGAAATGGTGCTGGCTAGGAAGAAGAAAGAGGAGATTCAGGAGCAGAAGAAGAAAGATGAAGAGGGTTTGCATCTTCTCACTTTACTCCTCCAGTGTGCAGAAGCAGTTTCAGCTGAGAATCTAGAAGATGCAAACAAGATGCTACTTGAGATTTCTCAACTCTCCACTCCATTTGGCACATCAGCACAGCGTGTAGCAGCATATTTCTCAGAAGCCATATCAGCAAGGCTTGTGAGTTCTTGTTTGGGAATCTATGCAACTCTTCCACACACCCCACTTAGCCAAAAGGTAGCATCAGCTTTCCAAGTCTTCAATGGGATCAGCCCCTTTGTAAAGTTCTCACATTTCACAGCAAACCAAGCCATACAAGAAGCCTTTGACAGGGAAGAGAGGGTGCACATCATAGATCTTGACATAATGCAGGGTTTGCAGTGGCCCGGGCTTTTCCACATCCTTGCTTCCAGGCCCGGCGGGCCTCCTTATGTGAGGCTCACGGGCCTGGGAACCTCCATGGAAGCCCTTGAGGCCACTGGCAAACGGTTGTCCGATTTTGCCAGCAAGCTTGGGCTTCCATTTGAGTTCTTCCCAGTTGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTTAATGTGAGCAAAACAGAAGCTGTTGCTGTCCACTGGTTGCAACATTCCCTCTATGATGTCACAGGATCAGACACCAACACTTTGTGGCTCTTGCAGAGGTTGGCTCCTAAAGTGGTGACTGTGGTGGAGCAGGACCTGAGCAATGCGGGTTCTTTCTTGGGAAGGTTTGTGGAGGCCATACACTACTATTCAGCATTGTTCGATTCTCTGGGGTCTAGCTATGGGGAAGAGAGTGAGGAGAGACATGTGGTGGAGCAGCAGCTACTTTCGAGGGAGATTCGGAATGTTCTGGCAGTTGGGGGGCCATCAAGGACAGGAGAGATCAAGTTCCATAACTGGAGGGAAAAGCTTCAGCAGTGTGGGTTCAGAGGGATCTCACTGGCTGGGAATGCTGCAACACAAGCTAGTCTTCTCCTTGGGATGTTCCCTTCTGAAGGGTACACCTTGGTAGAGGACAATGGGATCCTTAAACTTGGTTGGAAAGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCCTTCACTGCCATTCCCCATCATCATAACTAG 2457 0.4595 MAACALFTGGVNTTEEGNVTNNNNNCGSSSNSSNMSSEEQQHTLLQTMPQPHSERKMVRKRMASEMELHHNNNNINNSTATRFSRRSSTNMSSMNCSLPATEKAAAAAATTPTTLAAGTCNNNNNYHYNNSTNNNNINNNNNGLSHSSTLSRDNVAAAIQIPNYPTVTVTTNYSTMLLPSSIVNSSASSIPSSTTIASPNYHFQGLVENQNQNQTQDQNPVPQVCGFSGLPLFPSQNQRNNNRNSGSSGVVEVVSASSPSMDDTSATSNWIDGILKDLINSSNTVSIPQLISNVREIIYPCNPNLAVVLEHRLRLLTESAPPPSSSVEQRKRGLPPPNGIVPSLHFPDPSVNQNMYSNWGVPPINNPNNTNNNNPSVSLITLPSPPSTHQSYSPSQEKQQQQHQQNQEEDLAVAASAAAAAATSSAEMVLARKKKEEIQEQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTPLSQKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFASKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFTAIPHHHN* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3201 818 MobiDBLite consensus disorder prediction 11 50 - -
Lja1g3201 818 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 204 809 IPR005202 -
Lja1g3201 818 MobiDBLite consensus disorder prediction 347 411 - -
Lja1g3201 818 ProSiteProfiles GRAS family profile. 442 807 IPR005202 -
Lja1g3201 818 Pfam GRAS domain family 452 807 IPR005202 -
Lja1g3201 818 MobiDBLite consensus disorder prediction 1 54 - -
Lja1g3201 818 MobiDBLite consensus disorder prediction 234 265 - -
Lja1g3201 818 PANTHER PROTEIN SCARECROW 204 809 - -
Lja1g3201 818 MobiDBLite consensus disorder prediction 319 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3201 Lja-Chr1 39581821 39585365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3201 420 808 GRAS Transcription Factor Family AT3G54220 83.969 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g3201 GRAS 1.2e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3201 - - gmx:100806779 993.03