Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3198 ATGGCAGAGAGGAAAGGGAAGGTTTGTGTCACTGGAGGAACAGGGTTTCTTGGTTCATGGATCATCAAGAGACTCCTTGAGGATGGATATGCTGTTAACACCACTATTAGATCTAATCCAGGGGCTAAGAGAGATGTTAGCTTCCTCACAAATCTACCTGGTGCATCTCAGAAGCTAAAAATCTTCAAAGCTGATCTCAACATCCCCGAAAGTTTTGGTCCAGCAATTGAAGGTTGTGTTGGTGTATTCCACACTGCTACACCAATTGATTTTGCATTAGATGAACCAGAGGAAATAGTGACCAAAAGAACCATTGAAGGAGCATTAGGAATTCTCAAAGCATGCCTAAATTCAAAGACTGTGAAGAGGGTTGTTTACACTTCTAGTGGCTCTGCTGTTAATTCCTTTAGCGGCAAAGAGGATGAAGAAGGATTGGATGAGAGTTATTGGAGTGATGTAGAGTTGCTTAGAAGTGTGAAACCTTTTGGTTGGTCATATATAGTTTCTAAGACATTGGCAGAGAAGGCAGTGCTTGAATTTGGGGAACAACATGGGTTGAATGTTGTGACTCTCACACCTACTTTTATTGTTGGAAGATGGATTTGTCCTCAGCTTCCTGGCTCAATTGAGAAAGCACTTGTTTTGATATTAGGTAAAAAGGATCAAATTGGTGTCACTCTTTTCCATATGGTACATGTGGATGATGTAGCTAGAGCACATATATTCCTTCTTGAACATCTTAATCCAAAAGGGAGATATAATTGCTCACCATTCACTTTACCTATTGAAGAGATGTCTGAGCTTCTTTCAGCTAAATACCCAGAATTTCAAATACCGACAGTAGACGAGTTGAAGGAAATTAAAGGTGCCAAGTTGCCAAGTTTAATCTCGAAGAAACTTGTGGATGCGGGTTTTGAGTTTAAGCATAGCCTTGAGGAAATGTTCGAAGATGCAATTCAATGCTGCAAGGAAAGGGGTCATCTTTAA 987 0.4032 MAERKGKVCVTGGTGFLGSWIIKRLLEDGYAVNTTIRSNPGAKRDVSFLTNLPGASQKLKIFKADLNIPESFGPAIEGCVGVFHTATPIDFALDEPEEIVTKRTIEGALGILKACLNSKTVKRVVYTSSGSAVNSFSGKEDEEGLDESYWSDVELLRSVKPFGWSYIVSKTLAEKAVLEFGEQHGLNVVTLTPTFIVGRWICPQLPGSIEKALVLILGKKDQIGVTLFHMVHVDDVARAHIFLLEHLNPKGRYNCSPFTLPIEEMSELLSAKYPEFQIPTVDELKEIKGAKLPSLISKKLVDAGFEFKHSLEEMFEDAIQCCKERGHL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3198 328 Gene3D - 5 328 - -
Lja1g3198 328 Pfam NAD dependent epimerase/dehydratase family 8 255 IPR001509 -
Lja1g3198 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 323 IPR036291 -
Lja1g3198 328 CDD FR_SDR_e 8 305 - -
Lja1g3198 328 PANTHER DIHYDROFLAVONOL 4-REDUCTASE-LIKE PROTEIN 1 320 - -
Lja1g3198 328 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3198 Lja-Chr1 39519212 39521486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3198 5 328 Monolignol Biosynthesis Gene Families AT2G02400 35.890 2.99e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3198 - K13265 gmx:100194416 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3198 1 39519212 39521486 Lja1g3198 1 39519212 39521486 ECH