Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3192 ATGGAAGGGAGAGAAGGTATGAGCTCTGGTGTTACAGTGATAGGAGCAGAAGCTCCATCAGCATATCACATGGCACCAAGGGTTGAAGCTCCAATTCAAAACCAGGGTCCTGTTCCTGTTCCTGAAGCTTCAGCAGCTATTGTGGTCTCACCAGTGAGTGTGGGATTGGATGGAGGAGTAGTGAAGAAGAAAAGGGGCAGGCCAAGGAAATATGGGCCAGATGCTCCAGGTGGTGGTACTATGGCATTGTCGCCGTTGCCGATCTCATCTTCGGCTCCATTTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAACCGCAGGGGATGGAATACAAGCAATCCAAGAAAGCTGGGGTGGATCATCTAGGTGACTCTGTTGGTACAAATTTCATGCCCCATATCATTACCGTCAATGCTGGTGAGGACATTACGATGAAGGTTATATCTTTTTCCCAACAAGGGCCTCGAGCTATATGCATCTTGTCTGCTAATGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGAGGAACGTTGACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGATCTGGTGGGATGAGTGTTTCTTTGTCGAGCCCAGATGGCCGTGTTGTCGGTGGAGGAGTTGCTGGTCTTCTTGTCGCTGCCAGCCCTGTGCAGGTGGTGGTGGCAAGTTTTCTGCCAAGCAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGATTATGCATCACCCCCAGCTACTTTTACACCAGCCACCGCAGTGTCTTCTGCACCATCCGCAGCTAATGGTGAAAAGGAAGATGTCATGAGCTCCCATCTACTGCAAAATTCTGGAGCCTTCAACCCAAACCTCGCTCCTCCTCCTCCGTCGGCCTTTCGAAGAGAAAACTGGGTTAACATGCACTCTATGCCGGATTCGATGAAGTCCGCAACTGATATTAACATATCTTTACCTGATAATTAA 1026 0.4854 MEGREGMSSGVTVIGAEAPSAYHMAPRVEAPIQNQGPVPVPEASAAIVVSPVSVGLDGGVVKKKRGRPRKYGPDAPGGGTMALSPLPISSSAPFSNDFSSGKRGKPQGMEYKQSKKAGVDHLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVASFLPSNQQDQKPKKPKSDYASPPATFTPATAVSSAPSAANGEKEDVMSSHLLQNSGAFNPNLAPPPPSAFRRENWVNMHSMPDSMKSATDINISLPDN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3192 341 MobiDBLite consensus disorder prediction 60 81 - -
Lja1g3192 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 249 - -
Lja1g3192 341 ProSiteProfiles PPC domain profile profile. 127 268 IPR005175 -
Lja1g3192 341 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 340 - -
Lja1g3192 341 MobiDBLite consensus disorder prediction 93 116 - -
Lja1g3192 341 Gene3D - 132 262 - -
Lja1g3192 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 340 IPR039605 GO:0003680
Lja1g3192 341 MobiDBLite consensus disorder prediction 266 280 - -
Lja1g3192 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 245 IPR005175 -
Lja1g3192 341 CDD DUF296 132 222 IPR005175 -
Lja1g3192 341 MobiDBLite consensus disorder prediction 249 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3192 Lja-Chr1 39452949 39457733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3192 6 262 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.552 2.19e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3192 - - gmx:100777213 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3192 1 39452949 39457733 Lja1g3192 1 39452949 39457733 ECH
Lja1g3192 1 39452949 39457733 Lja3g1421 3 15039658 15044545 PCT