Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3190 ATGGATTTCAGTGGTGTTACTCGACGTGGGCCTTGTGGTGCCTGCAAGTTCATGAGGAAAAAGTGCGTGAAGGAATGCATATTTGCACCATACTTTGACTCATCGGTTCAAGGCGCTTCTCATTTCGCTGCGGTGCACAAAGTTTTTGGTGCTAGCAATGCCTCTAAGGTACTCATGTGTGTTCCACCTCACAAGCGTCTTGATGCTGTTTTTGCTCTCTGCTATGAGGCTTTTGCTAGGGTTAGAGACCCTGTTCATGGCTGTGTTGGCCACATTTTAGCGCTTCAACAACAGGTGGTGAACCTGCAGGCAGAATTAGCATATGTTCGTGCTCATCTTTCCACAATGCATCAAACCTGCTCACCCCCAAGTCTCAATTCCTCCTCATCAGATCATCATTTGGCATCAAACAACGACTTGCAAAGTGGCTATGCTTTCATGAATCTTGATCATCCTCTTCAAAATCTTCCAACATCGTTAGAGTCAACCAGCTTTTTCTGTCCATCGTCCTCTCAACAACTCGATGACCATCAGCCCATCACCAACTTCAAGCTTGGGAAAGGTTCTTAA 570 0.4596 MDFSGVTRRGPCGACKFMRKKCVKECIFAPYFDSSVQGASHFAAVHKVFGASNASKVLMCVPPHKRLDAVFALCYEAFARVRDPVHGCVGHILALQQQVVNLQAELAYVRAHLSTMHQTCSPPSLNSSSSDHHLASNNDLQSGYAFMNLDHPLQNLPTSLESTSFFCPSSSQQLDDHQPITNFKLGKGS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3190 189 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 144 - -
Lja1g3190 189 MobiDBLite consensus disorder prediction 170 189 - -
Lja1g3190 189 ProSiteProfiles LOB domain profile. 10 113 IPR004883 -
Lja1g3190 189 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Lja1g3190 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 9 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3190 Lja-Chr1 39424130 39426337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3190 10 142 AS2 family AT4G00210 65.414 4.12e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g3190 LOB 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3190 - - gmx:100791377 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3190 1 39424130 39426337 Lja1g3190 1 39424130 39426337 ECH
Lja1g3190 1 39424130 39426337 Lja3g1425 3 15076475 15081683 PCT