LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3189	ATGAGTCTAAATTCTTGCAGCAGCGGCGGTAGCGGTAGCGGCGGCAACGCAAGTGGTAGTGGATGCGGCGGTGGTGGCAGCAGCAGTAGCCCTTGCGGCGCGTGCAAGTTTTTGAGGAGGAAGTGCGTGGCTGGGTGCATTTTTGCTCCGTACTTTGACTCGGAGCAAGGATCGGCCCACTTCGCGGCCGTGCACAGGATTTTCGGGGCGAGCAACGTGTCTAAGCTCCTTCTCAACATTCCACCCAACAGGAGGCTTGATGCTGTGATCACCATTTGCTTTGAAGCACAAGCAAGGCTTAGAGATCCTGTGTATGGCTGTGTTGGTCACATCTTTGCCCTTCAGCAACAGGTGATGGCTTTACAGGCAGAAATCACCTTCTTGCAAGCCCACATCCCAACAACTGAGTTGCAGATGCCTCCACCCCCTCCTCCACCACAAGCGGCGGTGGCACCACCAGCTTTTTCAATCTCAGACCTTCCATCCACCACCACAGTGGCCATGCCAGCCGCCAACTATGACTTATCTGCACTTTTTGACCCACTCCCTTCATGGGCTGTGCAACAAAGAGCCATGGACCCACGCCAATACTTGGCTACAGGCCCATCACCAACCACTAGTGGTGCTTTTCATGCTGTGGCACGTGAGTATGCTCATAGACATGGGCCTGCTGCACCTGGGCCTTATGGGCCTCATGGGCCATCCTCCAATGCCTCCTCATCTCTATCAAAATTTTCTAAATGA	744	0.543	MSLNSCSSGGSGSGGNASGSGCGGGGSSSSPCGACKFLRRKCVAGCIFAPYFDSEQGSAHFAAVHRIFGASNVSKLLLNIPPNRRLDAVITICFEAQARLRDPVYGCVGHIFALQQQVMALQAEITFLQAHIPTTELQMPPPPPPPQAAVAPPAFSISDLPSTTTVAMPAANYDLSALFDPLPSWAVQQRAMDPRQYLATGPSPTTSGAFHAVAREYAHRHGPAAPGPYGPHGPSSNASSSLSKFSK*	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3189	247	Pfam	Lateral organ boundaries (LOB) domain	31	129	IPR004883	-
	Lja1g3189	247	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 18	1	219	-	-
	Lja1g3189	247	MobiDBLite	consensus disorder prediction	220	247	-	-
	Lja1g3189	247	ProSiteProfiles	LOB domain profile.	30	132	IPR004883	-
	Lja1g3189	247	PANTHER	LOB DOMAIN CONTAINING PROTEIN	1	219	-	-
	Lja1g3189	247	MobiDBLite	consensus disorder prediction	233	247	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3189	Lja-Chr1	39392993	39396710	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g3189	34	244	AS2 family	AT4G00220	55.046	1.69e-68	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Lja1g3189		LOB	2.2e-37	No_clan