Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3189 ATGAGTCTAAATTCTTGCAGCAGCGGCGGTAGCGGTAGCGGCGGCAACGCAAGTGGTAGTGGATGCGGCGGTGGTGGCAGCAGCAGTAGCCCTTGCGGCGCGTGCAAGTTTTTGAGGAGGAAGTGCGTGGCTGGGTGCATTTTTGCTCCGTACTTTGACTCGGAGCAAGGATCGGCCCACTTCGCGGCCGTGCACAGGATTTTCGGGGCGAGCAACGTGTCTAAGCTCCTTCTCAACATTCCACCCAACAGGAGGCTTGATGCTGTGATCACCATTTGCTTTGAAGCACAAGCAAGGCTTAGAGATCCTGTGTATGGCTGTGTTGGTCACATCTTTGCCCTTCAGCAACAGGTGATGGCTTTACAGGCAGAAATCACCTTCTTGCAAGCCCACATCCCAACAACTGAGTTGCAGATGCCTCCACCCCCTCCTCCACCACAAGCGGCGGTGGCACCACCAGCTTTTTCAATCTCAGACCTTCCATCCACCACCACAGTGGCCATGCCAGCCGCCAACTATGACTTATCTGCACTTTTTGACCCACTCCCTTCATGGGCTGTGCAACAAAGAGCCATGGACCCACGCCAATACTTGGCTACAGGCCCATCACCAACCACTAGTGGTGCTTTTCATGCTGTGGCACGTGAGTATGCTCATAGACATGGGCCTGCTGCACCTGGGCCTTATGGGCCTCATGGGCCATCCTCCAATGCCTCCTCATCTCTATCAAAATTTTCTAAATGA 744 0.543 MSLNSCSSGGSGSGGNASGSGCGGGGSSSSPCGACKFLRRKCVAGCIFAPYFDSEQGSAHFAAVHRIFGASNVSKLLLNIPPNRRLDAVITICFEAQARLRDPVYGCVGHIFALQQQVMALQAEITFLQAHIPTTELQMPPPPPPPQAAVAPPAFSISDLPSTTTVAMPAANYDLSALFDPLPSWAVQQRAMDPRQYLATGPSPTTSGAFHAVAREYAHRHGPAAPGPYGPHGPSSNASSSLSKFSK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3189 247 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
Lja1g3189 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 219 - -
Lja1g3189 247 MobiDBLite consensus disorder prediction 220 247 - -
Lja1g3189 247 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Lja1g3189 247 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 219 - -
Lja1g3189 247 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3189 Lja-Chr1 39392993 39396710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3189 34 244 AS2 family AT4G00220 55.046 1.69e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g3189 LOB 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3189 K21994 - gmx:100777737 266.159