Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3181 ATGGCGGCTAATCTTCTTCCCGCATCAAGGTCTTCTACAACGACGTCGTCTCAGGAGAAACGACACCGTTCCATCTTCGAGGTTCAACCGAACTTCTTCGACTCTTGCCTCCTTCTCCCTTCTCCTCACGCACCCATTTCCGAGCACCACCACCGCCACAGAAGGCTCAAAACCCTCGAACCATCATCGGACGACGTCGTTTTGGACGATGCCCCTCAAAACGCCGCCGTTTCGGTGCCTAGGTGGACCTGCAATACCTGCAAGGCGCAATTCGATTCCCTTCAAGACCAGCGTTCCCACTTCAAATCCGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAGAGTATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTTAAAGACTATGATGTGTCTAGTATATCTGGATCAGAGAGTGATGATGATGACAGTGAAAATGAGTCTCATAGTCAAAATCAAGTGCTTGATAAATATGGTCAAAGCTTTAAACAGAAGCTGTTCATCCGTCTTCAGTCAGGGCAGAGAGTTTCGGTCTGGAAGGGCTTGATTATGAATGTGACTGATAGTGTGTTGTATGGGAGTGAAGAAGTGGAGAAAGACGTGTTTGAGAAGCTGAAATCTCTGACTATTGAGCCCAGGGATAATACTCGTTTGAGAATCGTTCTGCTTGCGTCGGGCGGGCACTTTGCCGGGTGTGTCTTTGATGGTGATGTGGTTGTGGCTCAGAAGACTTTTCACAGATATGTTGTAAGGGCCAAGGCAGGGAAAAAGCAATCATCTAAAGATGCTTCTGGCAGGCTTGCACATTCTGCTGGGGCTTCACTTCGTCGTTATAATGAACTTGCTCTAAAGAAGGAAGTTCATGAACTGCTTGCTGCTTGGAGACCTTATTTTGACGCTTCTAGTTGCATTTTAATACACGCACCTTCAAGTAGTCGTCAACTGTTTTATGATGGAGAAAGATCTTATTTTACCAATCCGCAATGTCCTATTAGAAATATTGCTTTGAATGTTAGGAGGCCAACTTTAAAGGAAGCAAAACGTGTATATAGCCACTTGATGCAAGTATCCTATGAAGCAGATGAGAATGAGATTTTACAAAGCAACCAAGATGACTTGGTACCAATTCACATAGCTGAAACAAATAGCAGCCAATCCTCCAGCAAAGGGGACATGGCTGTGTTGGATGACAAAGATAAAGCTGAAGCTTGTTCAAGTAAACCAAATGATGAACTACGTTTTTCAAGTAATGAAGAAAGTGAGAATGAGCTTCCTGGTAAATCAACTCCGTTACATGAAGCTGCAAAATCCACCGACACTCAAAAGGTTATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATCAAAGATGAGAGGGGACGAACCCCGTATATGTTGGCACAAGACAAGGAAGTCAGGAATACTTTCAGAAGGTTTATGGCGTCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCGCAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAAGCTCAGGCTGAAGCTGCCTTGCATAAGAATGATTCCAAAAGTGTAGACCATCAATTGACTGGTCCATCATCAATTAAGGGACAATCTCAACTGCAAAGTGGGGTGAAATTATCGAAAGAGGAAGAAATAAGAAGAGCGCAGGCTGAAGAAAGAGAAAAAAGAGCAGCTGCTGCAGAAAGAAGAATGGCTGCCCTCAAAATTCAAGGTAATAGCGCAACCACTGCACCTACTATTTCAGAGCCTAAAAGTGGATTAGCCGGTGACATTTACTGTTCCTGTTGTAATTCATCGCTTGCCGGTAAAGTTCCATTCCACCGGTATAACTACAAATACTGTAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAAGATGGATGA 2007 0.4375 MAANLLPASRSSTTTSSQEKRHRSIFEVQPNFFDSCLLLPSPHAPISEHHHRHRRLKTLEPSSDDVVLDDAPQNAAVSVPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKSIVKEEDFEVLTSEFVKDYDVSSISGSESDDDDSENESHSQNQVLDKYGQSFKQKLFIRLQSGQRVSVWKGLIMNVTDSVLYGSEEVEKDVFEKLKSLTIEPRDNTRLRIVLLASGGHFAGCVFDGDVVVAQKTFHRYVVRAKAGKKQSSKDASGRLAHSAGASLRRYNELALKKEVHELLAAWRPYFDASSCILIHAPSSSRQLFYDGERSYFTNPQCPIRNIALNVRRPTLKEAKRVYSHLMQVSYEADENEILQSNQDDLVPIHIAETNSSQSSSKGDMAVLDDKDKAEACSSKPNDELRFSSNEESENELPGKSTPLHEAAKSTDTQKVMELLEQGLDPCIKDERGRTPYMLAQDKEVRNTFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQAEAALHKNDSKSVDHQLTGPSSIKGQSQLQSGVKLSKEEEIRRAQAEEREKRAAAAERRMAALKIQGNSATTAPTISEPKSGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3181 668 MobiDBLite consensus disorder prediction 139 159 - -
Lja1g3181 668 Gene3D - 351 493 IPR036770 -
Lja1g3181 668 SUPERFAMILY Ankyrin repeat 435 488 IPR036770 -
Lja1g3181 668 Pfam Bacteroidetes VLRF1 release factor 227 365 IPR041175 -
Lja1g3181 668 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g3181 668 Coils Coil 509 554 - -
Lja1g3181 668 ProSitePatterns Zinc finger C2H2 type domain signature. 84 106 IPR013087 -
Lja1g3181 668 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 16 664 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 537 556 - -
Lja1g3181 668 SUPERFAMILY beta-beta-alpha zinc fingers 78 113 IPR036236 -
Lja1g3181 668 Coils Coil 580 609 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 578 597 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 410 427 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g3181 668 Pfam Vms1-associating treble clef domain 631 663 IPR041540 -
Lja1g3181 668 MobiDBLite consensus disorder prediction 512 526 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 410 445 - -
Lja1g3181 668 ProSiteProfiles Ankyrin repeat profile. 433 465 IPR002110 GO:0005515
Lja1g3181 668 MobiDBLite consensus disorder prediction 557 577 - -
Lja1g3181 668 MobiDBLite consensus disorder prediction 507 597 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3181 20 615 C2H2 Transcription Factor Family AT1G01930 52.512 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3181 K26089 - gmx:100527709 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3181 1 39231349 39238006 Lja1g3181 1 39231349 39238006 ECH