Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3178 ATGAGTTTCTTCCAGGGAATCATTGATTCTTTCAATTCCATCTTCACTCCTGAACCTGATCACAATCACAATCTCAACCCTTCTTCTTCTTCTTCTTCTTCTTCACCAATGGAAGCTTCTCCTTCTCCTTCTCCTTCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTTCGATTTGGCCACGCAAGAGATCGACAAGGCCGTTCGAGCCGAAGAGTGGGGCTTGGTCGACGATGCTCTTCTTCACTACAGGAACGCACAGAAGATCCTCGTTGAAGCTAATTCTACTCCTGTTCCTTCTTTCATCACTTCCAGTGAAAAGCAGAAGGTGCAATCGTATCGTCAAAAGATATCAAAATGGCAGGGCCAAGTTTCTGAGAGATTACAGACTCTCAGTAGACGAGCAGGTAGCTCATCTGCCAATCAGAGCACCTCAAACATTGCACCAACTGCTGCAGCTCCGGTGAAACGACCAAATACTACAAAAAATGTAGCACCAAAGTATCCCCAAAGAATAGGTCAAGTGAAAGTTGGAAGCCCCAATTCTAGTCAGGCACCTGGTGTAAATAGTGACACAAAACTCGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGACGTTGCTGGACTTGAAAAGGCGAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTAGAAGGCCAGCTAGGGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACAATGCTTGCCAAAGCGGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGGTGGCAAATGAAAATGAGGCCAGCAGACGCTTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAAGAAATTGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACATACCTTTACCAGATGAAAATGTTCGGAGACGTATGCTAAAACACAAACTCAAGGGTCAAGCATACTCATTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACAGAAGGATATTCAGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTAGGTGCTGACATTCTTAATGTGAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTCAAGAAAGCAATGTCTGTCATCAGACCAAGCTTAAACAAGAGTAAATGGGAAGAGCTTGAGCGTTGGAATGAGGAGTTTGGTTCCAATTGA 1467 0.4301 MSFFQGIIDSFNSIFTPEPDHNHNLNPSSSSSSSSPMEASPSPSPSSSVSNERVAYKLKGYFDLATQEIDKAVRAEEWGLVDDALLHYRNAQKILVEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQTLSRRAGSSSANQSTSNIAPTAAAPVKRPNTTKNVAPKYPQRIGQVKVGSPNSSQAPGVNSDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRVANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQEIDDAVLRRLVKRIYIPLPDENVRRRMLKHKLKGQAYSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGADILNVKANQVRGLRYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3178 488 SMART smart 58 135 IPR007330 -
Lja1g3178 488 PANTHER BNAC04G50250D PROTEIN 4 488 - -
Lja1g3178 488 MobiDBLite consensus disorder prediction 18 50 - -
Lja1g3178 488 Gene3D - 212 482 IPR027417 -
Lja1g3178 488 MobiDBLite consensus disorder prediction 136 155 - -
Lja1g3178 488 CDD MIT_spastin 58 136 - -
Lja1g3178 488 Gene3D - 384 466 - -
Lja1g3178 488 Pfam AAA+ lid domain 408 438 IPR041569 -
Lja1g3178 488 Pfam ATPase family associated with various cellular activities (AAA) 253 383 IPR003959 GO:0005524|GO:0016887
Lja1g3178 488 Gene3D - 50 140 - -
Lja1g3178 488 MobiDBLite consensus disorder prediction 136 170 - -
Lja1g3178 488 Pfam Vps4 C terminal oligomerisation domain 454 486 IPR015415 -
Lja1g3178 488 CDD AAA 238 383 - -
Lja1g3178 488 PANTHER AAA DOMAIN-CONTAINING 4 488 - -
Lja1g3178 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 485 IPR027417 -
Lja1g3178 488 SMART AAA_5 249 385 IPR003593 -
Lja1g3178 488 ProSitePatterns AAA-protein family signature. 355 374 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3178 Lja-Chr1 39118813 39124778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3178 194 438 Calmodulin-binding Proteins AT3G56690 40.945 2.60e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3178 K13254 - gmx:100780946 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3178 1 39118813 39124778 Lja1g3178 1 39118813 39124778 ECH