Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3168 ATGAGTCCAAGTTTAGTCCATTCACATACAATTTTTCTTCCATTGTTTTTTTCATCTGATTTTTCATTCTACCTTTTTTTTCTATCACATCATCAATCATATCTCTCATTTCACTCATTTTTATTTATATCTCTCTTAATCCAACTTTTTCCATTGAATGTGAAGAGTCAGATTAATAAACCATTACCCAACTCCTTCACCCTAACATTACAGAAACTTGGGAAATTAAATGGTGAAAAGTGTTGTACTTGTTCCCTTCCACAGCGGATAAAGAGATATCACGGCATGCTGGAGACAATTGAACGCTACCGCAGGCATACCAGGAGTGCCCAACCAGTACCAAGAACAGATGAACAAAATATGCAGAATTTGAAGCTAGAAACAGCAAGCTTGATGAAGAAGATTGAGCTCCTTGAAGCTTCAAAAAGGGCACTTTTGGGAGAGGGCTTGGGGTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTAGAAAAGAGTGTAAACACTGTCCGTTCAAAAAAGAGTCAGGTTTACAATGAACAAATTGAGCAACTAAAAGAGAAGGAAAAAGTCCTACTTGCTGAAAATGCCAGACTCACTGAGCAGTATGGTAGCCAGCCACAGCCAGCAACAAATGAACAGAGGGAAAATCAATCCTATGCTGAAAGCAGTCCAAGTTCAGATGTAGAAACTGAATTGTTCATTGGACTACATAGGTCTAGTTTAAGATGA 738 0.3835 MSPSLVHSHTIFLPLFFSSDFSFYLFFLSHHQSYLSFHSFLFISLLIQLFPLNVKSQINKPLPNSFTLTLQKLGKLNGEKCCTCSLPQRIKRYHGMLETIERYRRHTRSAQPVPRTDEQNMQNLKLETASLMKKIELLEASKRALLGEGLGSCSLEELQQIEQQLEKSVNTVRSKKSQVYNEQIEQLKEKEKVLLAENARLTEQYGSQPQPATNEQRENQSYAESSPSSDVETELFIGLHRSSLR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3168 245 PANTHER MADS BOX PROTEIN 98 240 - -
Lja1g3168 245 ProSiteProfiles K-box domain profile. 121 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g3168 245 MobiDBLite consensus disorder prediction 202 232 - -
Lja1g3168 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 56 98 240 - -
Lja1g3168 245 Coils Coil 155 204 - -
Lja1g3168 245 MobiDBLite consensus disorder prediction 202 233 - -
Lja1g3168 245 Pfam K-box region 117 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja1g3168 245 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3168 Lja-Chr1 38868857 38880719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3168 96 192 MADS-box Gene Family AT2G45660 63.918 1.44e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3168 - - gmx:100037477 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3168 1 38868857 38880719 Lja1g3168 1 38868857 38880719 ECH
Lja1g3168 1 38868857 38880719 Lja3g1974 3 22698841 22719764 PCT