Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3164 ATGGATAATTATGGTTCATCTTCTTCTCCATACAGGTATCCAAACCCATATATGTACCCTCCCAACCCTCATCAACCATACCCACCTCCAGGTTCAGCTCCTGATCCATATGCACATCAACATCCAAATGCTCATGCTCATGCTCCTTATCCATACCCTTATTTTGCTTCACAAAATTCCTTCAACTATTCCTACCCTGCACCTCCTAGGTCACATTCACCCCCAACCTCATCATATTCTAGCCCTTTAGAATATCCCTACCCCCCTCCTCCTTCTCAATCACATTCACAATCACCCCCTTCAGCTCCCCCATTGGACTTTCCTCAAACACCTTACACTCATTCCCCCTCTTACCCATACCCTTACCATGCTCCTCCAGGGACTCAAACTCATAGCTCTCCCATGCCTACCCTTTCTCACCATGCTAGTTTACAACATGGGCCACCATCCTCTCATTACTATTATCAACAAAATGAGGCTTATTCTGAACCTCCTGGTGGTGGTGGTGGTGTGAATTTGCATGCCAATAGCTTCTCTGGTCCCTACTGGTCAGAGCCCACAGGAGGTGGTAAAGTATCACATTCACCATTACAATCACAATCACTATCACTATCACAATCACAAACCAGTGATCATGATTTCAGGCCTTCTCAGAGTTCTGTGTATCCACCTTTGGATGATCTCATGAGCAATGTTAAGTTGTCTGAGAATGAGCCTTCTGCTCCTGCATCACCCCCTGCGCCTGCAGGGCAGTCACTGTTTCATTCTGTTTCAGTTCCAAAACCGCAACAGAAGAGAGAGGACTTTTATGGATATTCTAATAACTCATTCTCTGGTTGGGGTTCCTCATACCCGGCCCGGGTGGATTCGTCGAAGCTTTCAGATTATTCTGGTTCGTTTAATGATTCAATGCATAGTCAGAGCTTGCAGATTGTTCCCACACAGAATAAAGGGTCCTTGAAAGTTTTGCTCCTGCATGGGAATTTAGATATGTGGGTTCATGAAGCCAAGAACCTTCCAAATATGGACATGTTTCACAAGACACTGGGGGATATGTTTGGTAAGTTACCTGGTAGTGTGAGTAATAAGATTGAAGGAACTGTGAATAGGAAGATTACCAGTGATCCTTATGTGTCGATTTCGATATCGAACGCGGTTATCGGGAGGACTTTTGTCATTAGCAACTCTGAGAATCCTGTTTGGATGCAGCATTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAACAAATATACTCAGGAGCAAAAGTTGAAGGAACCTACCCTATCCTAAATAGTAATGGGAAGCCTTGTAAACAAGGTGCTGCCCTGAGCTTGTCAATTCAGTACATCCCAATGGAGAAACTGAGCATTTATCATCAAGGAGTTGGAGCAGGGCCTGAATACATCGGTGTTCCGGGCACGTATTTTCCATTGAGGAAATGTGGAGCTGTTACTCTATACCAAGATGCTCATGTTGCAGATGGAAGTCTCCCTAATGTGTTGCTTGACAGTGGGATGTATTATGCGCATGGAAAGTGTTGGCAGGACATCTTTGACGCCATAAGTCAAGCTCGGCGTTTGATTTATATCACAGGATGGTCAGTGTGGCACAAAGTTAGATTGGTAAGGGAAATTCCTGGTTATCCATCAAATTACACCTTGGGTGATCTCCTGAGGACAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCTACATCAAGAAGCATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGATTTTTTAAGCATTCTTCGGTGCATGTGCTGCTTTGTCCTCGCATCGCTGGAAAAAAACATAGCTGGATCAAGCAAAAGGAAGTAGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAGTAACAGAAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTATGTGATGGGCGATATGATACTCCTCACCATCCTCTCTTTAGGACATTGCAGACGCTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAATGTCGGTGGTTGTCCACGGGAGCCATGGCATGACTTGCATTCTAGAATTGATGGCCCAGCAGCTTATGATGTTTTAACTAACTTCGAGGAGCGCTGGTTAAAAGCTTCAAAACCGCATGGGATTAAAAAATTGAAAATTTCCTATGATGATGCTTTGCTCAGGCTGGAAAGAATTCCAGATGTTATTGGCATAAATGATACTCCTAGTGCTGGTGATGATGATCTTGAAGCTTGGCATATTCAGATATTCCGGTCAATTGATTCAAATTCTGTGAAGGGGTTTCCAAAAGATCCCAGAGACGCATCTGGCAAGAACCTAGTATGCGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCCGCACAACATTACATTTATATAGAGAATCAATATTTCATCGGGTCTTCTTACAATTGGAGTCAACATAAAGATCTTGGTGCTAATAATTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATAAAAGCAAATGAGAGGTTCGCAGTATATATTGTTATACCAATGTGGCCAGAGGGTGTTCCTACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAAAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGATGGGGCTTGAAGCAGCATTCTCTCCTCAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGAGAGGCCATTGATATGTATGAAAATGTCAGCGTGTCAGGAAATCCTCCCCCAGCAAATAGTCCACAAGCAGCTAGCCGAAATAGCCGACGCTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAACGCTCTATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAAGCATTCTTGTCCACATGGACAAATCCATGGATACAGGATGTCACTTTGGGCAGAACATACAGGAACAATTGATGACTGCTTCTTGCAACCAGAGAGCCTTGAATGTGTTCGAAAGATTAGAGGAATGGGTGAAATGAACTGGAAACAATTTGCAGCAAATGAAGCAACAGAGATGAGAGGGCATCTACTAAAATACCCGGTTGAAGTCGATCGAAAAGGAAAAGTCAGATCCCTTCCCAGCCATGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTGGCCATGAAGGAGAATCTTACCATTTGA 3429 0.4313 MDNYGSSSSPYRYPNPYMYPPNPHQPYPPPGSAPDPYAHQHPNAHAHAPYPYPYFASQNSFNYSYPAPPRSHSPPTSSYSSPLEYPYPPPPSQSHSQSPPSAPPLDFPQTPYTHSPSYPYPYHAPPGTQTHSSPMPTLSHHASLQHGPPSSHYYYQQNEAYSEPPGGGGGVNLHANSFSGPYWSEPTGGGKVSHSPLQSQSLSLSQSQTSDHDFRPSQSSVYPPLDDLMSNVKLSENEPSAPASPPAPAGQSLFHSVSVPKPQQKREDFYGYSNNSFSGWGSSYPARVDSSKLSDYSGSFNDSMHSQSLQIVPTQNKGSLKVLLLHGNLDMWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTVNRKITSDPYVSISISNAVIGRTFVISNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGAKVEGTYPILNSNGKPCKQGAALSLSIQYIPMEKLSIYHQGVGAGPEYIGVPGTYFPLRKCGAVTLYQDAHVADGSLPNVLLDSGMYYAHGKCWQDIFDAISQARRLIYITGWSVWHKVRLVREIPGYPSNYTLGDLLRTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKKHSWIKQKEVGTIYTHHQKTVIVDADAGSNRRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNVGGCPREPWHDLHSRIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGINDTPSAGDDDLEAWHIQIFRSIDSNSVKGFPKDPRDASGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEMGLEAAFSPQDYLNFFCLGNREAIDMYENVSVSGNPPPANSPQAASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKHSCPHGQIHGYRMSLWAEHTGTIDDCFLQPESLECVRKIRGMGEMNWKQFAANEATEMRGHLLKYPVEVDRKGKVRSLPSHEEFPDVGGKIVGSFLAMKENLTI* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3164 1142 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 688 IPR001736 GO:0003824
Lja1g3164 1142 Pfam C2 domain 327 453 IPR000008 -
Lja1g3164 1142 SUPERFAMILY Phospholipase D/nuclease 822 1074 - -
Lja1g3164 1142 MobiDBLite consensus disorder prediction 14 36 - -
Lja1g3164 1142 Gene3D C2 domain 322 465 IPR035892 -
Lja1g3164 1142 Gene3D Endonuclease Chain A 528 767 - -
Lja1g3164 1142 ProSiteProfiles C2 domain profile. 305 451 IPR000008 -
Lja1g3164 1142 MobiDBLite consensus disorder prediction 126 158 - -
Lja1g3164 1142 Pfam Phospholipase D Active site motif 654 688 IPR001736 GO:0003824
Lja1g3164 1142 Pfam Phospholipase D Active site motif 989 1015 IPR001736 GO:0003824
Lja1g3164 1142 SMART C2_3c 328 450 IPR000008 -
Lja1g3164 1142 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 325 475 IPR035892 -
Lja1g3164 1142 SUPERFAMILY Phospholipase D/nuclease 534 753 - -
Lja1g3164 1142 MobiDBLite consensus disorder prediction 1 50 - -
Lja1g3164 1142 Gene3D Endonuclease Chain A 810 1036 - -
Lja1g3164 1142 PANTHER PHOSPHOLIPASE D 229 1142 IPR015679 -
Lja1g3164 1142 MobiDBLite consensus disorder prediction 191 217 - -
Lja1g3164 1142 Pfam Phospholipase D C terminal 1062 1132 IPR024632 -
Lja1g3164 1142 CDD C2_plant_PLD 321 474 - -
Lja1g3164 1142 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 988 1015 IPR001736 GO:0003824
Lja1g3164 1142 MobiDBLite consensus disorder prediction 63 260 - -
Lja1g3164 1142 MobiDBLite consensus disorder prediction 68 123 - -
Lja1g3164 1142 SMART pld_4 653 688 IPR001736 GO:0003824
Lja1g3164 1142 SMART pld_4 988 1015 IPR001736 GO:0003824
Lja1g3164 1142 PANTHER PHOSPHOLIPASE D ALPHA 1 229 1142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3164 Lja-Chr1 38750305 38765023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3164 72 1142 Phospholipase D Gene Family (Wang group) AT2G42010 68.670 0.0 1484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3164 K01115 - gmx:100801286 1800.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3164 1 38750305 38765023 Lja1g3164 1 38750305 38765023 ECH