Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3157 ATGCACACTTCAAACCCACCTTCTTCCTCCGCCGCCACCGTCGACTCCGAGCCGTTCCTCCTCCGTAGCCGCCGCTTCCTCCGCAGCGCGCCGCCTCCTCCTCTCCGCACCGCCGCAAGGTACTTCCGGCAGGCTAGCGGGCGGCGGATGATGCTGCGGGAGCCGTCGGTCCGTGTCCGGGAGGCGGCGGCTGAGGAGGTGGAGGAGCGGCAGAGCGAGTGGGCGTACTCGAAGCCGGTGGTGGCGCTGGACCTGGCGTGGAACTTGGTGTTCCTTGCTATTGGGGCCACCGTGCTGGGTGTGAGCACCAAGGAGGAGCCATGCGTGCCCCTCAGGGTGTGGATTGTTGGGTACTTGTTGCAGGGTCTGCTTCACTCTGTGTGTGTTGTCTTTGAATTCAGAAGAAAAAGAAGAAGGGAATTAGGGGCTTCTTCTTCTTTTTCTTCTTCATCTGGTTTGGAGCATGATAGAAGATGGGAGAGTGCTGCTATTCAATGGAGTTATAGTTCTGAGAGTGATGGTTCTTCAGAGCAGCTTCTCCAGACTGAGGAAAACAGCATCACGAAACACATTGAGTCTGCAAATACCATGCTTTCATTCATATGGTGGATTCTTGGGTTCTACTGGGTTACTGCTGGTGGCCAGAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATTACGTTTCTTGCTTTCGATGTTGTGATTGTACTGATCTGTGCTGCTGTTGCATGTTTTATTGGCATTGCCGTCTGCTGTTGTCTACCGTGCATACTTGCTCTTTTGTATGCGATGGCGGATCAAGAAGGGGCAACCGAGGAAGAAATCGACCAGTTGCCAAAATATAAGTTCAGAATGATAAAGGAATTTAAGAAAGAAGGCGATATCCAAGAATCTTCCAGTGGAGTAATGACAAAATGTGACAGTGATACAGCTGCTGAGCATGTTATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGACGGTGTTGAACTCAGACAACTTCCTTGCAACCACCATTTTCATCGCACATGCATTGACAAATGGCTGCTAATCAATGCTACATGCCCTCTCTGCAAATTCAACATTTTGGAGACTGGAAACCTCCATCAAGAAGTTTGA 1143 0.5057 MHTSNPPSSSAATVDSEPFLLRSRRFLRSAPPPPLRTAARYFRQASGRRMMLREPSVRVREAAAEEVEERQSEWAYSKPVVALDLAWNLVFLAIGATVLGVSTKEEPCVPLRVWIVGYLLQGLLHSVCVVFEFRRKRRRELGASSSFSSSSGLEHDRRWESAAIQWSYSSESDGSSEQLLQTEENSITKHIESANTMLSFIWWILGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICAAVACFIGIAVCCCLPCILALLYAMADQEGATEEEIDQLPKYKFRMIKEFKKEGDIQESSSGVMTKCDSDTAAEHVIALEDAECCICLSAYDDGVELRQLPCNHHFHRTCIDKWLLINATCPLCKFNILETGNLHQEV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3157 380 SMART ring_2 326 366 IPR001841 -
Lja1g3157 380 CDD RING-H2_RNF111_like 325 369 - -
Lja1g3157 380 Pfam Ring finger domain 325 367 IPR001841 -
Lja1g3157 380 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Lja1g3157 380 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 380 - -
Lja1g3157 380 SUPERFAMILY RING/U-box 315 373 - -
Lja1g3157 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 372 IPR013083 -
Lja1g3157 380 PANTHER TARGET OF ERK KINASE MPK-1 1 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3157 Lja-Chr1 38633277 38638197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3157 4 375 C3H Transcription Factor Family AT1G68070 47.200 3.68e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3157 - - gmx:100785943 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3157 1 38633277 38638197 Lja1g3157 1 38633277 38638197 ECH