Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3155 ATGAACATGATGAGAAGGTTGAAGAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGAGGGGATTCTACTACGAGAAGAACTAGGTATGACCAAGAGGCTGAAGAAAAGGTCATTGTGGAATGTAATCCTGTTGAGAGATGTGACAGAGATCATGAGCAGGATGTAAGTGCATCAAAAGAAACTACTGCTGGCACATTTGAATCCAATGTTTCGACGGTGGCTAGAATAGATAAGTCAGGTCATGATCAGCTTCCAAAAGAATTACATGAAACGAAAATTAGAGACGATAAACCAAAAAGCAATGAAAAGGATATTGAGGCAACTGTTGTGAACGGTAGTGGAACAGAAACGGGTCAAATAATTACAACTGCTATTGGAGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCGGAACGTGTCGTTGGTACCGGTTCTTTTGGCGTTGTCTATCAGGCTAAATGCCTTGAAACTGGTGAAGCGGTTGCGATAAAGAAAGTTTTGCAAGACAAGAGATATAAGAACAGGGAGCTCCAGGTTATGCGCATGCTTGACCACACAAACGTTCTTAAACTAAAGCACTGTTTCTATTCAACGGCCGAAAAAGATGAGTTGTACCTTAACCTAGTTTTGGAGTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCAATATGTCAGGATGCACCAACATATGCCTATCATTTATGTGCAACTGTATACTTACCAGATATGTCGCGGTTTAAATTATTTGCATCGTGTAATTGGAGTTTGTCATCGTGACATCAAACCCCAAAATCTATTGGTTAATCCCCAGACTCATCAGTTGAAAGTGTGTGATTTTGGGAGTGCAAAAATGCTGGTTCCGGGTGAACCCAACATATCATACATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGGGCAACAGAATACACAACTGCTATTGATATTTGGTCTGCTGGTTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCTGGAGATAGTGGGGTTGATCAATTAGTAGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAACCCAAATTACACCGAATTTAAGTTTCCTCAGATTAAAGCACACCCGTGGCACAAGGTTTTTCACAAAAAGGTGCCTCTTGAAGCATTGGATCTTGTGTCAAGAATGCTTCAGTATTCACCTAATCTACGATGCTCTGCTTTGGATGCATGTGCACACCCCTTCTTTGATGCTCTGCGAGAGCCCAATGTAAGCTTGCCGAACGGGCGAGTTCTTCCTCCTTTGTTTGATTTCTCAGCTCAAGAACTGGCAGGCGCACCCGACGAGTTGCGCCGGCGTCTCATTCCTGAGCATGCGAGTTCTTGA 1413 0.4289 MNMMRRLKSIASGRTSISSDPGGDSTTRRTRYDQEAEEKVIVECNPVERCDRDHEQDVSASKETTAGTFESNVSTVARIDKSGHDQLPKELHETKIRDDKPKSNEKDIEATVVNGSGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTAEKDELYLNLVLEYVPETVYRVSKQYVRMHQHMPIIYVQLYTYQICRGLNYLHRVIGVCHRDIKPQNLLVNPQTHQLKVCDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPMFPGDSGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKKVPLEALDLVSRMLQYSPNLRCSALDACAHPFFDALREPNVSLPNGRVLPPLFDFSAQELAGAPDELRRRLIPEHASS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3155 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Lja1g3155 470 PANTHER SHAGGY-LIKE KINASE 6 470 - -
Lja1g3155 470 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3155 470 MobiDBLite consensus disorder prediction 26 60 - -
Lja1g3155 470 Gene3D Phosphorylase Kinase; domain 1 126 220 - -
Lja1g3155 470 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 470 - -
Lja1g3155 470 ProSitePatterns Protein kinases ATP-binding region signature. 147 171 IPR017441 GO:0005524
Lja1g3155 470 SMART serkin_6 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3155 470 Gene3D Transferase(Phosphotransferase) domain 1 221 469 - -
Lja1g3155 470 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3155 470 MobiDBLite consensus disorder prediction 9 25 - -
Lja1g3155 470 MobiDBLite consensus disorder prediction 1 71 - -
Lja1g3155 470 SUPERFAMILY Protein kinase-like (PK-like) 140 448 IPR011009 -
Lja1g3155 470 CDD STKc_GSK3 136 428 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3155 Lja-Chr1 38610830 38616204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3155 147 430 Core Cell Cycle Gene Families AT1G76540 35.593 6.20e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja1g3155 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3155 K00924 - gmx:100786458 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3155 1 38610830 38616204 Lja1g3155 1 38610830 38616204 ECH
Lja1g3155 1 38610830 38616204 Lja3g1950 3 22388756 22394034 PCT