Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3154 ATGAGTTTTGGAGGTGTTTTTGAGAACAAGCAAGGTGGTGAAGGTGCTAAGATTGTTGCAGATATTGCTTATAACCAAGATAAAATGCCCTCTGGTGCAATCTCACAGCCTCGCTTAGCCACACCCACTTTGGCTAAATCCATGCTCAACTCTTCTAGCCTATCTCTAGCCCTTCAAACAAATATTGATGGGCAAGGAAATGGGCATGGGAATGGATTGATACATGAGAATTATGAAGGACATGGATTGAGAAGAAGCAGAGAAGAAGAGCATGAAAGCAGATCTGGGAGTGATAACATGGATGCTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCGTCCAAGAAAAAAGCGTTATCACCGACACACTCCTCAGCAAATACAAGAACTTGAATCGCTGTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAAAGGCTTGAACTCAGCAAAAGGCTTTGTTTGGAAACCAGGCAGGTCAAGTTTTGGTTTCAAAATCGAAGAACCCAAATGAAGACTCAATTGGAACGCCATGAGAATTCCTTGCTCAGGCAAGAGAATGATAAGCTGAGAGCAGAGAACATGTCTATTAGAGAAGCAATGAGGAATCCAATGTGCTCAAATTGTGGTGGTCCTGCAGTTATGGGTGAGATTTCACTGGAAGAACAACATCTTAGAATTGAAAATGCTCGTCTCAAGGATGAACTAGACCGAGTTTGCGCACTTGCTGGCAAGTTCTTAGGCCGCCCCATTGGCCCTCCATTGCTAAACTCAAGTTTGGAGCTTGGAGTTGGGAGCAATGGTTTTGGTGGATTGAGCAATATGCCATCAACTTTGGGTCCTGATTTTGTGGGGATATCAAGCCCTTTAGGCATGGTAACACCGCCGCCGCCACCGGCACAATCAACTAGAACTACAACAGCTATGATGAGTTCTGGCTTTGACAGATCAGTGGAGAGGTCAATGCTTCTGGAACTTGCTTTGGCTGCAATGGAGGAGTTGGTTAAAATGGCTCAGACTGGGGAACCTCTTTGGGTTTTAGAAGGGGGAAGAGAAATTTTGAACCATGATGAGTACAATAGGACAGTGACCCCTTGCATTGGGTTGAGACCCAATGGTTTTGTCTCAGAGGCTTCTAGAGAAACTGGCATGGTCATCATCAACAGCTTGGCCCTTGTTGAAACTTTAATGGACTCAAATCGGTGGTCAGAGATGTTCCCTTGTGTGGTTGCAAGAACCTCTACCACTGAGGTGATATCTAATGGAATAAATGGAACCAGAAATGGTGCCCTTCAACTGATGCATGCTGAACTTCAAGTCCTTTCTCCCTTGGTTCCTGTTCGTGAGGTCAATTTTTTACGCTTTTGCAAGCAGCACGCAGAGGGGGTGTGGGCAGTGGTAGATGTGTCCATTGACACCATCCGAGAAACTTCTTCTGGTACACCCACTTTTCTTAACTGCAGGAGGCTTCCTTCTGGCTGTGTGGTGCAAGACATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATATGACGAAAGCCAAGTGCACCAACTGTACAGGCCCTTGTTGAGTTCAGGAATAGGGTTTGGTGCACAGCGTTGGGTTGCCATCCTTCAACGCCAATGCGAATGCTTAGCCATCTTAATGTCCTCAGCACTTCCCTCTAGAGAACACGCAGCAATAAGTGCGGGTGGGAGGCGAAGCATGCTGAAGCTGGCGCAGAGGATGACCAACAACTTCTGCGCCGGTGTCTGTGCCTCAACAGTACACCAATGGAACAAACTCAACAACACCAGCAACAACAACGCAGGTGCTGAGGAGGTGAGGGTGATGACAAGGAAGAGCGTCGATGATCCAGGCGAGCCTCCAGGCATCGTGCTTAGCGCGGCAACCTCCGTGTGGCTCCCAGTTGCGCCGCAGAGGGTATTTGATTTCCTCCGCGACGAGAGGCTTAGGAGCGAGTGGGACATACTCTCCAATGGTGGACCAATGCAGGAGATGGCTCACATTGCCAAAGGACAAGACCATGCCAACTGTGTTTCCCTCCTCCGAGCTAGTGCTATGAATGCAAACCAGAGTAGCATGTTGATTTTGCAGGAGACATGCACAGACGCGTCGGGGTCGCTTGTAGTGTACGCGCCGGTGGACATCCCGGCAATGCACGTCGTGATGAATGGCGGCGACTCTGCTTATGTTGCGCTACTACCATCCGGGTTCTCTGTGGTGCCTGATGGGAACGGTCAAGGCGGTGGGGATGATCGCGGCAGCGCGTCGGGTGGGTCGCTTCTGACGGTGGCATTCCAGATCCTTGTGAACAGCCTCCCCACTGCAAAGCTCACGGTGGAGTCTGTGGAGACGGTGAACAACCTCATCTTGTGCACCGTTCAAAAGATAAAAGCAGCTCTTAACGGCGAAAGCTGA 2433 0.4924 MSFGGVFENKQGGEGAKIVADIAYNQDKMPSGAISQPRLATPTLAKSMLNSSSLSLALQTNIDGQGNGHGNGLIHENYEGHGLRRSREEEHESRSGSDNMDAASGDDFDAADNRPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIREAMRNPMCSNCGGPAVMGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIGPPLLNSSLELGVGSNGFGGLSNMPSTLGPDFVGISSPLGMVTPPPPPAQSTRTTTAMMSSGFDRSVERSMLLELALAAMEELVKMAQTGEPLWVLEGGREILNHDEYNRTVTPCIGLRPNGFVSEASRETGMVIINSLALVETLMDSNRWSEMFPCVVARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSSGTPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGIGFGAQRWVAILQRQCECLAILMSSALPSREHAAISAGGRRSMLKLAQRMTNNFCAGVCASTVHQWNKLNNTSNNNAGAEEVRVMTRKSVDDPGEPPGIVLSAATSVWLPVAPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFSVVPDGNGQGGGDDRGSASGGSLLTVAFQILVNSLPTAKLTVESVETVNNLILCTVQKIKAALNGES* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3154 810 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Lja1g3154 810 ProSiteProfiles START domain profile. 316 551 IPR002913 GO:0008289
Lja1g3154 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 68 807 IPR042160 -
Lja1g3154 810 SUPERFAMILY Bet v1-like 576 803 - -
Lja1g3154 810 MobiDBLite consensus disorder prediction 67 125 - -
Lja1g3154 810 Pfam Homeodomain 117 172 IPR001356 GO:0003677
Lja1g3154 810 Pfam START domain 325 548 IPR002913 GO:0008289
Lja1g3154 810 CDD START_ArGLABRA2_like 320 547 - -
Lja1g3154 810 Coils Coil 168 203 - -
Lja1g3154 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 68 807 - -
Lja1g3154 810 SUPERFAMILY Homeodomain-like 100 174 IPR009057 -
Lja1g3154 810 SUPERFAMILY Bet v1-like 318 548 - -
Lja1g3154 810 Gene3D - 104 190 - -
Lja1g3154 810 CDD homeodomain 116 174 IPR001356 GO:0003677
Lja1g3154 810 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Lja1g3154 810 SMART START_1 325 548 IPR002913 GO:0008289
Lja1g3154 810 MobiDBLite consensus disorder prediction 78 97 - -
Lja1g3154 810 SMART HOX_1 115 178 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3154 Lja-Chr1 38580944 38588706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3154 1 810 Homeobox Transcription Factor Family AT3G61150 63.560 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g3154 START 3.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3154 K09338 - gmx:100783614 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3154 1 38580944 38588706 Lja1g3154 1 38580944 38588706 ECH
Lja3g1951 3 22422491 22428144 Lja1g3154 1 38580944 38588706 ECH
Lja1g3154 1 38580944 38588706 Lja3g1951 3 22422491 22428144 PCT