Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3147 ATGGTGGAAGATAATGATGTTGCAATTGAATCACGTTCCACAGAAGAATGGTTGTTGCATACACAAGAACTTGTACCTGTTGCAGTTAACAAAGCAAGAGAGGTTAAGGTTTTTTCTTGCAGATGGAAGGTGATCATTTCGAAATTAGAACAGATCCCGTCGTGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAAGAACAGTTGCAGGCTGTGTCAAGAACACTCATTGAAGCAATTGAATTGGCTGAGTTCTGTGTGAAGGAAAGGTATGAGGGTAAGCTTCGCATGCAGAGTGATCTCGATGCATTAACCGGGAAGCTCGATTTGAATTTAAGGGACTGTATGCTTCTGATCAAAACTGGTATGCTTGGCGAGGCTTTTGCTTCATTAGCGCCAGCTGTGGTAGAATCAGATGTTGCTGCTACACACAACAACATAAGGGAATTGCTCGCGCGCCTTCAGATCGGTCACATGGAAGCAAAGCATAAAGCTTTAGACAACCTTGTTGAGGTCATGAAAGAAGATGAGAAGAATGTTTTATCCGTTCTTGGTCGGAGTAACATTGCTTCTTTAGTTCAATTGCTCACAGCAACATCACATAGGATAAGAGAGAAAGCAGTAACGGTTATCTGCTCGCTCGCGGAATCTGGAAGTTGTGAGAATTGGTTAGATTCTGAAGGGGTTTTGCCTCCTCTCATAAGGCTTGTTGAATCAGGCAGTGCTGTGGGGAAAGAGAAGGCTGCAATTACCCTTCAGCGGCTGTCAATGGAGGCGGAAACTGCGCGTGCGATCGTTGGAAACGGTGGTGTTCGCACGCTGGTTGAGCTTTGTCAAACCGGTGACTCCGTGTCACAAGCTGCTGCAGCTTGTGCTCTCAAGAACATATCAGCAGTTCCTGAGGTGAGACAAACTTTAGCTGAAGAAGGGGTTGTGAGGGTTGCCATCAATTTGTTGAACTGTGGAATGTTGTTAGGTTCTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTCACTGCAAGCAACGAGAATTTAAGGAGGAGTGTTGTGTCAGAAGGTGGAGTGAGAAATCTTCTAGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCTGTTGGAGCATTGAGGAATCTGGTCGGATCGGTCTCGGATGAAACTTTGATTTCAATGGGGCTCCTTCCGCGCTTGGTTCATGTTCTGAGGTCTGGATCTTCCAGTGCTCAGCAGGCTGCCACATCCGCGATTTGCCGGGTTTGCAGGTCAACAGAGATGAAGAAATTGGTTGGTGAAGTGGGCTGCATTCCTCTCCTTGTGAAGATGCTTGAGGCTAAATCTAACAGTGCTAGGGAGGTTGCTGCACAGGCAATTGCAAGCTTGATGGTTCTGTCACGGAATCGCGGGGAAGTTAAGAAGGATGGTAAGAGTGTGCCAAATCTGGTTCAGTTGCTTGATTCAAGTCCTCAAAACACTGCAAAAAAGTATGCAGTTTCTTGCCTTGGATCACTTTCTTCTAGTAAGAAGTGTAGGAAGCTTATGATCTCATATGGGGCAATTGGGTATCTTAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTACATGAGAGGTTGGAAAGAGGGAAATTGAGGAGTTTGTTTAGCAAGAAATAG 1674 0.4516 MVEDNDVAIESRSTEEWLLHTQELVPVAVNKAREVKVFSCRWKVIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSRTLIEAIELAEFCVKERYEGKLRMQSDLDALTGKLDLNLRDCMLLIKTGMLGEAFASLAPAVVESDVAATHNNIRELLARLQIGHMEAKHKALDNLVEVMKEDEKNVLSVLGRSNIASLVQLLTATSHRIREKAVTVICSLAESGSCENWLDSEGVLPPLIRLVESGSAVGKEKAAITLQRLSMEAETARAIVGNGGVRTLVELCQTGDSVSQAAAACALKNISAVPEVRQTLAEEGVVRVAINLLNCGMLLGSKEYAAECLQNLTASNENLRRSVVSEGGVRNLLAYLDGPLPQESAVGALRNLVGSVSDETLISMGLLPRLVHVLRSGSSSAQQAATSAICRVCRSTEMKKLVGEVGCIPLLVKMLEAKSNSAREVAAQAIASLMVLSRNRGEVKKDGKSVPNLVQLLDSSPQNTAKKYAVSCLGSLSSSKKCRKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3147 557 Gene3D - 452 541 IPR011989 -
Lja1g3147 557 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 2 557 - -
Lja1g3147 557 SUPERFAMILY ARM repeat 153 534 IPR016024 -
Lja1g3147 557 Pfam Armadillo/beta-catenin-like repeat 269 304 IPR000225 GO:0005515
Lja1g3147 557 Pfam Armadillo/beta-catenin-like repeat 428 465 IPR000225 GO:0005515
Lja1g3147 557 Pfam Armadillo/beta-catenin-like repeat 392 426 IPR000225 GO:0005515
Lja1g3147 557 Gene3D - 143 369 IPR011989 -
Lja1g3147 557 Gene3D - 371 451 IPR011989 -
Lja1g3147 557 SMART arm_5 182 222 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 427 467 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 305 346 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 347 386 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 264 304 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 468 510 IPR000225 GO:0005515
Lja1g3147 557 SMART arm_5 387 426 IPR000225 GO:0005515
Lja1g3147 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 557 - -
Lja1g3147 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 234 276 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3147 Lja-Chr1 38392371 38394472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3147 307 533 U-box Gene Family AT2G23140 27.897 1.21e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3147 - - gmx:100781453 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3147 1 38392371 38394472 Lja1g3147 1 38392371 38394472 ECH
Lja1g3147 1 38392371 38394472 Lja3g1958 3 22492492 22496026 PCT