Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3146 ATGGCAGAAGCTGAAGCTAAAAGTGTTTCCAAGAATGTATCTCAATCAAACAAACTCAACACCATCAAAAGATTCATTGGTGTGAGGCAAAGGCCTTCAGGAAGGTGGGTGGCAGAGATCAAAGACTCCTCACAGCATGTGAGGCTCTGGCTTGGAACCTATGATACACCAGAAGCAGCAGCAAGAGCCTATGATGAAGCAGCAAGAGCACTACGAGGGGAAAATGCAAGAACCAATTTTTCAGAGAGTTATTACCAAACCAAACAAGTCTCTGATGCCAAGTTAAGCAGGAATCTACAGAGCATTATAAACAGGGCAAGTGATTGCAATAAGTCATCAAAAAGCAGGGTGAGTGATCATTTCACCTTTGCTAGCATTTTCAACCGTAGAAGTGACCAAATTCAAATTCCTCCAATGGATGTTAAGAGCATTGAGAAAGTGGTGCAGCCTAGCATTGTTGTTCCCCAAGTGGAACCCGACCCTCCTTCTTGGGCCGGGTTCCGGCAAACCCGCCTGGATTCAGGTTCAGGCGGTTCTGACGAAGGGGAGTTAAGGGTTGGTGATAAAGGGTCATTGGATCAATTGATGGGGTGGGTGGATAGCCCTAATATCTATGCATGTGATGATGATGGAAGTGAGGGTTCAAGGAGCAAGAGGTTCAAGGTCTCTCCTTCTGTGCTTGTGCCTCCAACTTTCAACGATTGTGGTTCTCCATTTAGTGGTTGTGGCTCTCCATATAATGGTTATGGCTCCCCTTATAGTGGCTATCGCTCTCCTCACTATAATGGTGGAAAGTGA 798 0.4586 MAEAEAKSVSKNVSQSNKLNTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEAAARAYDEAARALRGENARTNFSESYYQTKQVSDAKLSRNLQSIINRASDCNKSSKSRVSDHFTFASIFNRRSDQIQIPPMDVKSIEKVVQPSIVVPQVEPDPPSWAGFRQTRLDSGSGGSDEGELRVGDKGSLDQLMGWVDSPNIYACDDDGSEGSRSKRFKVSPSVLVPPTFNDCGSPFSGCGSPYNGYGSPYSGYRSPHYNGGK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3146 265 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Lja1g3146 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 213 - -
Lja1g3146 265 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lja1g3146 265 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Lja1g3146 265 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Lja1g3146 265 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Lja1g3146 265 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lja1g3146 265 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 213 - -
Lja1g3146 265 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lja1g3146 265 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3146 Lja-Chr1 38385564 38386403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3146 7 91 AP2-EREBP Transcription Factor Family AT5G19790 56.471 2.86e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g3146 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3146 K09286 - gmx:100799444 261.536