Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3145 ATGTTGGGTTCAGGTACCAATCTGGTGACCACGGTCATTGGATTTGGGATGAGTGCTACTTTCATTGTGTTTGTCTGCACAAGAATAATCTGTGGAAGGCTACGAAGGGGTGCTGAATCTCGGATGATATATGAGTTTGAATCAAGATTTGATCTAGAACAGCCAGAACATCATGTTAATGACCATGATCCTGAACCTGTTTTGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCAATTGAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCGAAATGCGGTCACACTTTCCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACTTGTCCGGTATGCCGTCTTCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTAACATTTACTACTACCATGAGCCAATCTCATGATGAGTCTCATACATCAGAAAGGAATGAAGATGTTGAGAGGCGTGTTGAACCTACTGCTAGCAACTCCTTACAACCAACCTCTGCAGAACCAGAAGCAAGGCAATGA 579 0.4145 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRRGAESRMIYEFESRFDLEQPEHHVNDHDPEPVLLDAIPTLKFNQEAFSSIEDTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTTTMSQSHDESHTSERNEDVERRVEPTASNSLQPTSAEPEARQ* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3145 192 Pfam Ring finger domain 89 132 IPR001841 -
Lja1g3145 192 PANTHER OS11G0150450 PROTEIN 1 167 - -
Lja1g3145 192 MobiDBLite consensus disorder prediction 158 174 - -
Lja1g3145 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Lja1g3145 192 SMART ring_2 90 131 IPR001841 -
Lja1g3145 192 MobiDBLite consensus disorder prediction 144 192 - -
Lja1g3145 192 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Lja1g3145 192 MobiDBLite consensus disorder prediction 175 192 - -
Lja1g3145 192 CDD RING-H2_EL5_like 89 132 - -
Lja1g3145 192 SUPERFAMILY RING/U-box 80 138 - -
Lja1g3145 192 PANTHER OS02G0676500 PROTEIN 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3145 Lja-Chr1 38370848 38374485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3145 4 174 C3H Transcription Factor Family AT1G72220 30.337 5.41e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3145 - - gmx:100780922 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3145 1 38370848 38374485 Lja1g3145 1 38370848 38374485 ECH
Lja1g3145 1 38370848 38374485 Lja3g1963 3 22550757 22553219 PCT