Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3142 ATGGGGGTTGGTGGTAATTTCTGGGACCTGTTGAAGCCCTATGCCCGCAACGAAGGTTTTGAATTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCGTTCTGGATTGTTCAGCACAGGAATGCCATCAAGGGGAATGTCAGGAAGCCTCATCTTAGGGTCACATTCTTCCGCACTATCAATTTGTTCTCCAAGTTTGGAGCATTGCCGGTGTTTGTTGTTGATGGGACTCCATCCCCACTGAAATCACAGGCAAGGATTACAAGATTTTTCCGGTCTTCTGGTATTGAATTGGCTAGCTTGCCAGTGCCTGAAGAAGGTGTTTCAGCCGAGAGGAACCGATCATTTTCAAAATATGTTCAAGAATGTGTGGAACTTGTGGAGCTACTTGGAATGCCTGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTTGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGTGTTATAAAGTGTTTCTCTCCCAATTCTAAAGAACCGTTTGAATGCTACTATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCACTCTTTTGGTTGGGAATGATTACGATATGAGTGGTGTTCAAGGGATTGGGCTTGACAGTGCTCTTCGTTTTGTTCAAGCTTTCAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTCAGAAATTCCCATCAGCCTTAAATCCGAGGACAATATGGATATGGATGGAAACTCACCAAATACGAAACAATCTCACTGCTCATTCTGTGGGCATCCAGGCAACAAAAGGGACCATATGAAGCTTTCTTGTGAATTTTGTCTCACAAATGACAGTGAAGGTTGCCTGAAAAAGCCAGAGGGTTTTAAATGTGATTGCTTGTCTTGTGGTATGAATAGGAAACATCAAGGACAGAAAAGGCTGGAAAATTGGTACACAAAAATTTGTCACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATGTTTTTATGCAATAACAATGGTTACTTTTCTGCAAATGACAGGCCTCAGATCTCATGGGAAAGACCCAATATCGAGATGCTGATTGTTTTTTTAAACTTCCATCAGAACTGGGAGCCATCCTATATTCGGCGGATGATATTTCCTATGATGTCCACCATCTTCTTGAGAGACATGGCTACAACTACCGTCGAAAGCTTGTTATTTGGGCAGTATGAGTTTGATTCTTTAGAACGTGTGAAGATGAGATATGGTTATCAGTTTTATGTGGTCAAATGGAAACGTGCAGGAGGCAGCATTGCATCTAAAATTCCATCAAATGAATCTAGCACGCAAGAAGATGTTAGAGAGTCAGATGAAACGGTGGATCTGCTGGATGACGGTGATCTTCCTGAGATTCGTGACGATGGTGGGTGTAGTTTCCTGTTGACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTTCCAGCTGAAGTCAAAAGGTTTCAGCAGGAACAGGAACTGAAGGATATGAAAAAAAGAAAGAATTCAACCTCAAAAGTTCAAGAAAAAGAAAGATCAGCATCACCAAATTCAAGGAGTATCCAGCTAAATATCACAGGGTTCTACCCATCAACCAAAATCAAACATCAACCAAAACGAGGAGAAGAGTCATCCAAGGATGTTGATAGCCAAGGAAGTGGAGGCTCAAAAACGAAAAGGGAAACTTCAAGTGCTAATCTTTCTAAATCCGTGAGGCGCCGCCTTTTATTTGACTAA 1827 0.416 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIKGNVRKPHLRVTFFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPVPEEGVSAERNRSFSKYVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQGIGLDSALRFVQAFSEDDILNRLHEIGKGNASEIPISLKSEDNMDMDGNSPNTKQSHCSFCGHPGNKRDHMKLSCEFCLTNDSEGCLKKPEGFKCDCLSCGMNRKHQGQKRLENWYTKICHKIAKEPNFPKDEIIDMFLCNNNGYFSANDRPQISWERPNIEMLIVFLNFHQNWEPSYIRRMIFPMMSTIFLRDMATTTVESLLFGQYEFDSLERVKMRYGYQFYVVKWKRAGGSIASKIPSNESSTQEDVRESDETVDLLDDGDLPEIRDDGGCSFLLTDENMDLVGAAFPAEVKRFQQEQELKDMKKRKNSTSKVQEKERSASPNSRSIQLNITGFYPSTKIKHQPKRGEESSKDVDSQGSGGSKTKRETSSANLSKSVRRRLLFD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3142 608 MobiDBLite consensus disorder prediction 522 538 - -
Lja1g3142 608 CDD PIN_GEN1 2 202 - -
Lja1g3142 608 MobiDBLite consensus disorder prediction 539 561 - -
Lja1g3142 608 MobiDBLite consensus disorder prediction 578 600 - -
Lja1g3142 608 SMART xpgineu 128 198 IPR006086 GO:0004518
Lja1g3142 608 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 596 - -
Lja1g3142 608 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Lja1g3142 608 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Lja1g3142 608 MobiDBLite consensus disorder prediction 522 608 - -
Lja1g3142 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Lja1g3142 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Lja1g3142 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Lja1g3142 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Lja1g3142 608 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Lja1g3142 608 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Lja1g3142 608 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 596 IPR006084 -
Lja1g3142 608 SMART xpgn3 1 96 IPR006085 GO:0004518
Lja1g3142 608 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Lja1g3142 608 Gene3D - 3 197 - -
Lja1g3142 608 Gene3D - 198 257 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3142 16 245 Core DNA Replication Machinery Family AT5G26680 31.349 1.09e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3142 K15338 - gmx:100791251 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3142 1 38354779 38360739 Lja1g3142 1 38354779 38360739 ECH