Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3117 ATGGATATGACTTGTAGCTTGCCGCAGTCAAGAATGATACAAGGAGGTGTTGGGAGACACATATCAGCTGGCCGTTTCGATTCGAGAGGGAGGGGTTTTGGTTGTGCATTTCTCGGCAACTGGAGAAGTGGTTCGAGATTGCATTTTAGTAGGATGAATAAAGTTAGTGGTGTTTCTGCTTGTGTTTCTGGTGGTGAAGGTTTGAATGTGAAGAGAGGTTTATCTTGTAAGAATAATAGTCTTTTTACGGGGTCGAGAGTGATTTGGTCTAAGTGCCAGGGCAGTGATTCTTTAGCTTATGTTGATGGCAACGGCCGCAATGTTGATCATGTGGAAGGTTCTGGTGAGGGTTTAGGACCGGGACCCGTTTCTAGTGCTGAACTTGAAGCAACTTTGGAAGAGGAAGGGCAAGCTGGGAGCGAAGGTGGAGAGTTTGAAATAGGAGTAGAGGAACTAAGTGTGGATGAACTGAAAGAGCTATTGCAAAGAGCATTGAAGGAGCTAGAAGTTGCTCAAATAAATAGTACCATGTTTGAAGAGAAGGTTAAAAAGATATCAGAGACTGCTATATTTTTACATGATGAAGCAGCTCGTTCTTGGAGCGAGGTTAATTCCACTCTAGACACCATTCAAGAAATTGCAAATGAAGAACATACAGCTAAAGAAGCTGTCCAAAATGCAACAATGGCTCTTTCTGTAGCCGAGGCCAGGCTTCAAGTAGCCTTAGATTCTTTGGAGGTCGCAAAAGAAGTGCCGGATTCAGAAAAAGGTTCTGATGAGGGTACTGGGGACAAGGACATGGCGGAGAAGGGGAAATCACTTTTCAATGCTCAAGAAGATATCAAGCAATGCCAGACACATTTAGCCAATTGTGAGGCAGAGTTGCGACGTTTGCAAAGTAGGAAGGAGGAGCTGCAGACGGAAGTGAGCAAATTGCAAGAAATTGCTGAAAAGGCACAGCTGAATGCAGTAAAAGCCGAGGAGGATGTTACAAACATAATGCTTTTAGCAGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACACAACGTGTAAATGATGCAGAGATTGCCTTACAGCGAGCTGATAAGTCTGTCTCTAATTTGAATGCTGATACCACAGAATCTATACAAGTTCAGGATGTCGAGTCTGTTTCAGAGGATGAGAAAGTGGATCAAGGTTTTTCTAGTGATGCCACTGTTGAAAGAAACGGAGATTTGGCAACTGATGATGAATCTCTTCTTCCCAAGTTATCACCTGAAACACTGTCTGAAAAAACCAGCCATTTGGAAGATATAACACAGTCTGATAATTTAAGTGATAATGAGAATGGTGTTCAAACAAAAAAACAGGAAACACAAAAAGATTTGACTAGAGACAGTTCACCCTTTGCCCCCAAGGCATTATTGAAGAAGTCTTCTCGATTCTTTTCTGCATCGTTCTTCTCTTCTACTGAAGATGGGGCCGAGTTCACACCAACATCAGTTTTCGAGGCCCTTGTGTTATTGGCAAAGAAGCAGTTGCCCAAGCTGGTTCTTGGGTTATTGTTAATGGGAGCAGGGGTTGCCTTCTATGCCAATAAGGCAGAGAGGAATGGTCTGCTGCTTCAACAGGCAGATGTTATTATGACCAGTGCTGAAGAAGTTTCCTCTAGTGCAAAGCCTCTGGTTAGACAACTTCAGAAACTCCCCAAGAAAATTAAGAAACTCATTGCGTCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTTTGGTTACTACTCGCAAGTGTTATATTTGTCCCAATTTTTCAAAAACTCCCTGGAGGTAGTCCTGTTCTTGGATACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGTCACGTTCATGCAACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATCGGCCTGGAGCTCTCTGTTGAAAGACTAAGTTCGATGAAGAAATATGTTTTTGGATTAGGCTCCGCACAGGTTTTAGCCACTGCTGTAGCTGTTGGCTTGGTGGCTCATTATATTTGCGGCACACCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCGTTATCATCTACTGCTGTTGTTCTTCAGGTGTTGCAGGAGCGAGGTGAGAGCACATCACGGCATGGACGAGCTACATTTTCTGTTTTACTTTTTCAGGATTTGGCTGTTGTGGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGAATGGCTGGTGTAAAGGCAGCAGTTGCTATCACTGCCATAATTGCAGGTGGACGATTGCTCCTCCGACCAATATACAAGCAAGTTGCAGAAAATCAAAATGCAGAAATATTTTCAGCCAATACGCTCCTTGTTATTCTTGGGACTAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTGCAAGTTGAATCTGATATTGCTCCATATCGTGGTCTTCTTTTGGGGCTGTTCTTTATGACGGTTGGAATGTCTATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTCGTCACTGGGACATTGGGACTCTTGATATTTGGCAAGACTCTCTTGGTTTGTTTGATGGGTAAAATCTTTGGGATTTCCCTCATTTCTGCCATAAGAGCTGGTCTTCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCTTTCGGTGAAGCTGTTAATCAGGGCATAATGTCTAGTCAGCTGTCATCTTTGCTGTTTCTTGTCGTGGGCATTTCAATGGCCATCACACCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGCATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACCGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAACTTCTTTCCGAGCGACTTATTCCATTCGTTGCACTGGATGTGAGAGGTGATAGAGTGGCAGTTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCCGGTAGTCGAGAGGTACTACACAAGATTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTCTAGATACGCCGGGAGCAAATTATAGAACAGTTTGGGCTCTTAGCAAGTACTTCCCTAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACATTGGAACCCAGTCTTCAACTAGCAGCTGCCGTGCTTGCTCAGGCTAAACTCCCCACATCAGAGATTGCAGCAACTATAAATGAATTTAGATGCCGCCATCTAGCTGAGCTCACTGAGTTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATAATAGAATAATGAGCAAACCCAAATCCCAATCCCCAGATTCATTAGATGAGGCTCAAGTCTCTGAAGGGACATTGGCAATATGA 3570 0.4403 MDMTCSLPQSRMIQGGVGRHISAGRFDSRGRGFGCAFLGNWRSGSRLHFSRMNKVSGVSACVSGGEGLNVKRGLSCKNNSLFTGSRVIWSKCQGSDSLAYVDGNGRNVDHVEGSGEGLGPGPVSSAELEATLEEEGQAGSEGGEFEIGVEELSVDELKELLQRALKELEVAQINSTMFEEKVKKISETAIFLHDEAARSWSEVNSTLDTIQEIANEEHTAKEAVQNATMALSVAEARLQVALDSLEVAKEVPDSEKGSDEGTGDKDMAEKGKSLFNAQEDIKQCQTHLANCEAELRRLQSRKEELQTEVSKLQEIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATQRVNDAEIALQRADKSVSNLNADTTESIQVQDVESVSEDEKVDQGFSSDATVERNGDLATDDESLLPKLSPETLSEKTSHLEDITQSDNLSDNENGVQTKKQETQKDLTRDSSPFAPKALLKKSSRFFSASFFSSTEDGAEFTPTSVFEALVLLAKKQLPKLVLGLLLMGAGVAFYANKAERNGLLLQQADVIMTSAEEVSSSAKPLVRQLQKLPKKIKKLIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAVGLVAHYICGTPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGMAGVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVVTGTLGLLIFGKTLLVCLMGKIFGISLISAIRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRGDRVAVGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRCRHLAELTELCEASGSSLGYGYNRIMSKPKSQSPDSLDEAQVSEGTLAI* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3117 1189 Coils Coil 154 174 - -
Lja1g3117 1189 Coils Coil 351 371 - -
Lja1g3117 1189 Gene3D - 581 969 IPR038770 -
Lja1g3117 1189 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1189 - -
Lja1g3117 1189 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 592 872 IPR004771 GO:0006812|GO:0008324|GO:0016021
Lja1g3117 1189 MobiDBLite consensus disorder prediction 379 461 - -
Lja1g3117 1189 MobiDBLite consensus disorder prediction 1168 1189 - -
Lja1g3117 1189 Pfam Sodium/hydrogen exchanger family 591 961 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja1g3117 1189 Gene3D - 989 1153 - -
Lja1g3117 1189 ProSiteProfiles RCK N-terminal domain profile. 993 1115 IPR003148 GO:0006813
Lja1g3117 1189 Coils Coil 274 329 - -
Lja1g3117 1189 Pfam TrkA-N domain 994 1107 IPR003148 GO:0006813
Lja1g3117 1189 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 990 1131 IPR036291 -
Lja1g3117 1189 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1189 - -
Lja1g3117 1189 MobiDBLite consensus disorder prediction 249 268 - -
Lja1g3117 1189 MobiDBLite consensus disorder prediction 432 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3117 Lja-Chr1 38043348 38056293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3117 74 1189 Inorganic Solute Cotransporters AT4G00630 69.157 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3117 - - lja:Lj1g3v2627640.1 1880.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3117 1 38043348 38056293 Lja1g3117 1 38043348 38056293 ECH
Lja1g3117 1 38043348 38056293 Lja3g1918 3 22094431 22106472 PCT