Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3114 ATGTCATTTACAGGAACTCTTGATAAATGCGCGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTGTACCTTACCATAAAAGCTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACTATGAGCACCTATTCCTCAATGGATGGTGTCCTCTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGCAACTTTAGCAAGAACTTTCAAGCAAAGTCAACTGAAAAACAAAATGAGCTGCTGAATAGGACCCCAAGCAGACTCTCCTCGATGTTCAGTGGAACCCTAGACAAATGTGCAGTTTGCTCAAAAACAGTCTATCCCCTGGAAAAGATGTCATTAGAAGGAGAATGCTACCACAAGAATTGCTTTAGATGTGCTCGTGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCTTTGGATGGTGTCCTCTACTGCAAGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGACCTACAGCCATGTGCTTGAGGCTTGTAATGCCAACAAGAAGAATGCCACTCCACCTCCTGAACCTGCTGATGATCAAGAGCCATCATCAGAGCCTGCAGAACCACCTAAGGAACCCACAGAAGAGGAAGAAAAGCCTGAAACATAA 645 0.4419 MSFTGTLDKCAACDKTVYVVDLLTLEGVPYHKSCFKCSHCKGNLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQAKSTEKQNELLNRTPSRLSSMFSGTLDKCAVCSKTVYPLEKMSLEGECYHKNCFRCARAGCHLTHSSYAALDGVLYCKHHFQQLFMEKGTYSHVLEACNANKKNATPPPEPADDQEPSSEPAEPPKEPTEEEEKPET* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3114 214 MobiDBLite consensus disorder prediction 196 214 - -
Lja1g3114 214 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lja1g3114 214 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Lja1g3114 214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Lja1g3114 214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lja1g3114 214 Pfam LIM domain 10 65 IPR001781 -
Lja1g3114 214 Pfam LIM domain 106 161 IPR001781 -
Lja1g3114 214 SMART lim_4 9 61 IPR001781 -
Lja1g3114 214 SMART lim_4 105 157 IPR001781 -
Lja1g3114 214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lja1g3114 214 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lja1g3114 214 MobiDBLite consensus disorder prediction 178 214 - -
Lja1g3114 214 Gene3D Cysteine Rich Protein 5 72 - -
Lja1g3114 214 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lja1g3114 214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lja1g3114 214 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Lja1g3114 214 Gene3D Cysteine Rich Protein 102 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3114 Lja-Chr1 38024002 38026422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lja1g3114 LIM 4.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3114 - K09377 twl:119983128 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3114 1 38024002 38026422 Lja1g3114 1 38024002 38026422 ECH
Lja1g3114 1 38024002 38026422 Lja3g1917 3 22089073 22090775 PCT