Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3112 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCATGGACAGCTGAAGAGGATGAAGTTCTTACTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTTCGGTGGACAAACTATCTGAGACCTGACATTAAACGTGGTCCATTTACTCCTGAGGAAGAAAAACTAGTCATTCAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATTGCCTCTCAGCTACCAGGAAGAACTGACAATGAAATAAAAAACTTTTGGAACACCCACTTGAAGAAACGTCTCAAAGCCCTGGGTCTTGACCCAAAAACCCACCAGCCCAACCATGCACCTTCTGCATCATCTTCCATTTCCACACGCCACATGGCTCAATGGGAAGGTGCAAGGCTTGAAGCAGAGGCAAGGCTTTCAAGCCTCAACACCACCAAAACAACTCACCACTGTGACCACTTCCTCCGCATGTGGAACTCTGAAATTGGAGATTCATTTCGCAACTTTCACAAGCCAGATCATAATCAAAACAAGAACATTAACAGCTTCTGCTTGAGTCCTCTTTCTGCAGGATCATCTTCCAACAAATGTGACTCAGTTTCTGCTGTTACTACTAATGCTGCTGACCCATTTGGATCCTCAAACAATGCTGTGAAACAAGAGTTGTTGTGTGCTGAAGAAGATGTGGTTCAGCATCATGGGTCTGATTCATCATGCTCTAATGACTTGGAGGACTCATCAGACACTGCTTTGCAGCTCTTACTAGATTTTCCTATCTACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTGTTTGTCCCCTCTAG 885 0.4475 MGRTPCCDKKGLKKGPWTAEEDEVLTNYIKKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKALGLDPKTHQPNHAPSASSSISTRHMAQWEGARLEAEARLSSLNTTKTTHHCDHFLRMWNSEIGDSFRNFHKPDHNQNKNINSFCLSPLSAGSSSNKCDSVSAVTTNAADPFGSSNNAVKQELLCAEEDVVQHHGSDSSCSNDLEDSSDTALQLLLDFPIYNDMSFLEGNSFVCPL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3112 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja1g3112 294 MobiDBLite consensus disorder prediction 123 146 - -
Lja1g3112 294 Gene3D - 70 143 - -
Lja1g3112 294 CDD SANT 16 62 IPR001005 -
Lja1g3112 294 PANTHER PROTEIN ODORANT1-LIKE 1 288 - -
Lja1g3112 294 MobiDBLite consensus disorder prediction 129 144 - -
Lja1g3112 294 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja1g3112 294 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja1g3112 294 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lja1g3112 294 Gene3D - 11 68 - -
Lja1g3112 294 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja1g3112 294 SMART sant 67 115 IPR001005 -
Lja1g3112 294 SMART sant 13 64 IPR001005 -
Lja1g3112 294 CDD SANT 70 113 IPR001005 -
Lja1g3112 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja1g3112 294 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja1g3112 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3112 Lja-Chr1 37993956 37996645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3112 1 288 MYB Transcription Factor Family AT3G61250 61.716 2.55e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g3112 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3112 K09422 - gmx:100800408 420.624