Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3111 ATGAACAACAACAATAGAGCGAGATGCCCACCTCCTGGGATCGGGTTAGGTCGAGGTAACGGTGGCGGCGGCGGTGGTGGTTTTAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACAACAACAACAACAACATCAGTATGTGCAGAGGCACATGATGCCGAATCAACAGCAGTACCACCAGCAGCAGCATCAACAAAATCAGCCGCAGTACCACCAGCAGCATCAACACAATCAACAGCAGCAGCAGCAACAGCAACAACAGTGGTTGAGAAGGACCCAGTTGGGTGGTAATGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAATCTGCCGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCCCCTCCAGATACACGCTACCAGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATTTATGAGAAGGGTTTTGAAAAGCCATCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACTGCTGCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACAAGAGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTTGCAAAGAAAGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTTCTCCTAACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGGAAAGATATCTTCGTAAGCCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGCTTCAAATAAACCAATCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATGTTACAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACGCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGATATGGGCACCTTGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTCGGCACTGAAATAAAACAAATTCCGCCACACATTGACCAGGCAATATATTGTAGATAG 1566 0.4215 MNNNNRARCPPPGIGLGRGNGGGGGGGFNSNPGFQPRPHQQQQQQHQYVQRHMMPNQQQYHQQQHQQNQPQYHQQHQHNQQQQQQQQQQWLRRTQLGGNDTNVVEEVEKTVQSESADPSSQDWKARLKIPPPDTRYQTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDHDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLSPNRQILMYSATYPVTVKDFKERYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3111 521 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 294 302 IPR000629 -
Lja1g3111 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 501 IPR027417 -
Lja1g3111 521 MobiDBLite consensus disorder prediction 107 137 - -
Lja1g3111 521 Pfam Helicase conserved C-terminal domain 373 479 IPR001650 -
Lja1g3111 521 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 16 521 - -
Lja1g3111 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 518 IPR001650 -
Lja1g3111 521 Gene3D - 101 351 IPR027417 -
Lja1g3111 521 SMART helicmild6 398 479 IPR001650 -
Lja1g3111 521 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Lja1g3111 521 Gene3D - 352 521 IPR027417 -
Lja1g3111 521 MobiDBLite consensus disorder prediction 1 90 - -
Lja1g3111 521 MobiDBLite consensus disorder prediction 33 90 - -
Lja1g3111 521 CDD SF2_C_DEAD 359 488 - -
Lja1g3111 521 SMART ultradead3 166 362 IPR014001 -
Lja1g3111 521 CDD DEADc_DDX6 149 349 - -
Lja1g3111 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 348 IPR014001 -
Lja1g3111 521 Pfam DEAD/DEAH box helicase 172 336 IPR011545 GO:0003676|GO:0005524
Lja1g3111 521 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 16 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3111 Lja-Chr1 37982229 37990610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3111 147 518 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 3.18e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3111 K12614 - fve:101307921 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3111 1 37982229 37990610 Lja1g3111 1 37982229 37990610 ECH