Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3109 ATGGCTTCCCAGAACCCACCGGAGGAACAAGAAAACTCTCAACAGCACCGTCATTGGTCCCTCCAAGACTTCGAGATCGGTAAACCTCTCGGCAAAGGCAAATTCGGCAGAGTCTACGTCGCCAGAGAAATCAAGAGCAAATATGTTGTGGCCTTGAAGGCTATTTTCAAGGAACAAATAAAGAAGTACGAGTTTCACAAACAACTGCAGAGGGAGATGGAGATACAGAGCAGTCTTCGCCGCCACCCGAACATCCTGCGTCTCTATGGCTGGTTTCATGATGCTGAGCTCATTTTCTTGATTCTTGAGTATGCTCATAATGGGGAGCTTTATAAGGTGCTAAGAAAAGAAGGGCGTCTCACGGAGAAGCAAGCTGCCACGGCGTTGGCTTATTGTCATGAGAAGCATGTTATTCATCGAGATATCAAGCCCGAGAATTTGTTACTTGACCATGAGGGTTGTCTTAAAATTGCGGATTTTGGTTGGTCCGTACAGTCCAGGGACAGCAAAAAAAGAGAGACCATGTGTGGAACATTGGATTATTTAGCACCAGAAATGGTTGATGAGTACCAAACTCATGACTATGCAGTTGATAACTGGACTCTGGGTATCCTTTGTTTTGAGTTCCTCTATGGTTTTCCTCCATTTGAGGCTAAGAGTAAAGATGATACCATGAAAAGGATAAGCAATGTTGACCTAATCTTCCCTTCTACCCCTTCTGTTTCTTTAGATGCCGAAAATCTGATTCGTCGGCTCTTGGTGAAAGACTCCTCAAAAAGGCTCTCTCTTCAAAAGATAATGGAACATCCTTGGATAATTAAGAATGCGAATCCGACGGGTATCTGCAAGTAG 852 0.4425 MASQNPPEEQENSQQHRHWSLQDFEIGKPLGKGKFGRVYVAREIKSKYVVALKAIFKEQIKKYEFHKQLQREMEIQSSLRRHPNILRLYGWFHDAELIFLILEYAHNGELYKVLRKEGRLTEKQAATALAYCHEKHVIHRDIKPENLLLDHEGCLKIADFGWSVQSRDSKKRETMCGTLDYLAPEMVDEYQTHDYAVDNWTLGILCFEFLYGFPPFEAKSKDDTMKRISNVDLIFPSTPSVSLDAENLIRRLLVKDSSKRLSLQKIMEHPWIIKNANPTGICK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3109 283 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Lja1g3109 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lja1g3109 283 Pfam Protein kinase domain 24 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3109 283 ProSitePatterns Protein kinases ATP-binding region signature. 30 57 IPR017441 GO:0005524
Lja1g3109 283 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 281 IPR030616 GO:0004672
Lja1g3109 283 CDD STKc_Aurora 23 272 - -
Lja1g3109 283 PIRSF ILK 1 276 - -
Lja1g3109 283 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Lja1g3109 283 ProSiteProfiles Protein kinase domain profile. 24 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3109 283 SUPERFAMILY Protein kinase-like (PK-like) 12 276 IPR011009 -
Lja1g3109 283 SMART serkin_6 24 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3109 Lja-Chr1 37967482 37969909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3109 4 277 CBL-interacting serine-threonine protein kinases AT5G25110 38.028 1.64e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Lja1g3109 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3109 K08850 - gmx:100800111 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3109 1 37967482 37969909 Lja1g3109 1 37967482 37969909 ECH