Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3106 ATGGTGTTTACGGTGCGGAGGCATGAGCCGGAGCTTGTTGGTCCAGCTGAAGCGACACCTCATGAGGTGAAGCTTCTTTCAGACATTGATGATCAAGATGGTCTACGTTTTCAAATTCCAGTGGCACAGTTCTATCGCTACCATCCATCTATGGCAGGGAAGGACCCTGTTGATTCCATTAGAAAAGCACTGGCCAAAACACTTGTGTTTTACTATCCCTTTGCAGGTAGGCTTAGGGAAGGGCCTGATAGGAAACTCATGGTGGATTGCACCGCTGAGGGTGTTTTATTCATTGAGGCCGATGCAGATGTCACTCTTGACGAATTTGGTGATAATCTTCAGACACCCTTCCCATGCATGGAAGAGCTCCTGTATGAAGTTCCTGGATCTGACGAAATGCTTAACACACCCTTGCTGCTTATACAAAAATTAATTGCTCGTGGGATGCCCCAACCTTCAATCCTCCCCGTGTGGTGTAGAGAGATTCTAAGTGCAAGAAACCCACCAAGGGTGACATGCACTCATCCTGAATACGACGAACAGGTACCTTACAACAAGGAAATTTCCATCCCTCTAGATGACATGGTCCACGAGTCTTTCTTCTTTGGTCCCAATGAGCTAGCTACAATTCGTAGTTTCCTTCCTTCCCACCAACTTCGCTGCACAAATTTTGAAGTTCTCACTGCATTTGTTTGGCGTTGCCGCACAGTAGCATTGCAACCAAGCAGTGATGAGGAGGTTCACATACTCTGCATAGTCAATGCACGTGCCAAGCTTGACTCTCCATTACCAACTGGTTACTATGGCAACGCTTTTGCATTTTCTCCCGCAATTACCACTGCTGGGAAGCTATGTGAAAATCCACTGGGATATGCAGTAGATTTAGTGAGGAAAGCAAAAGCAAATATCACTAGGGAGTATATGCATTCATTGGCAGATTTAATGGCCATTAAGGGACGACCACACTTCTCTATGGAAAAATCGTTTCTTGTGTCAGATTTGAAGCTTGCTGGGTTCAGACAGGTGAACTTTGGGTGGGGAAATGCTATTTATGGAGGTCTTGCCAAGGGAGGAATTGGGCCAATACCTAGTTTAGCAAGCTTTAACGTTCCCTTTAAAAATGATAAAGGTGAGGAAGGTTTACTTACACCAATGTGTTTACCATCTAAAGCCATGGCGAGGTTCATAAAAGAGTTGGATAATGTGCTCAAGAACCATATCCAACCTACTAGGGGCGGTTTAAAGTCTGGTTTTATCGTTTCTTCATTATAG 1272 0.4481 MVFTVRRHEPELVGPAEATPHEVKLLSDIDDQDGLRFQIPVAQFYRYHPSMAGKDPVDSIRKALAKTLVFYYPFAGRLREGPDRKLMVDCTAEGVLFIEADADVTLDEFGDNLQTPFPCMEELLYEVPGSDEMLNTPLLLIQKLIARGMPQPSILPVWCREILSARNPPRVTCTHPEYDEQVPYNKEISIPLDDMVHESFFFGPNELATIRSFLPSHQLRCTNFEVLTAFVWRCRTVALQPSSDEEVHILCIVNARAKLDSPLPTGYYGNAFAFSPAITTAGKLCENPLGYAVDLVRKAKANITREYMHSLADLMAIKGRPHFSMEKSFLVSDLKLAGFRQVNFGWGNAIYGGLAKGGIGPIPSLASFNVPFKNDKGEEGLLTPMCLPSKAMARFIKELDNVLKNHIQPTRGGLKSGFIVSSL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3106 423 PANTHER ALCOHOL ACYLTRANSFERASE 4 142 - -
Lja1g3106 423 PANTHER ALCOHOL ACYLTRANSFERASE 145 405 - -
Lja1g3106 423 Gene3D - 1 144 IPR023213 -
Lja1g3106 423 Pfam Transferase family 145 398 - -
Lja1g3106 423 Pfam Transferase family 7 142 - -
Lja1g3106 423 Gene3D - 179 398 IPR023213 -
Lja1g3106 423 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 145 405 - -
Lja1g3106 423 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3106 Lja-Chr1 37936780 37938151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3106 12 399 Monolignol Biosynthesis Gene Families AT5G48930 28.341 1.89e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3106 K19861 - gmx:100797017 603.979