Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3093 ATGGCAACTGATATGCAGAGGTTTGTTGGAACAAGTGAGGATGATGAAGAAATGGGAATGGGTGTGAAGGATGAGGATGAGGATGATGATGATTATGATGAAAATGGTGAGGATGGAAATGCTCCGGGGATGATAGAGATTGATGATGGGAATGGGATACAAACTGCCCCAGGTGACAACAGGTTTCAACAACACCAGCAGTTTCAAGAGCTAGAAGAACCAGGGGGAGGTGCTCGAAGGTCTAGGCCGCTTGAAGAGAAAGAAAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCTATCACTGCAAGAATCTTGGCAGGGCTTCGCAGGCATGGCAATTACAATCTTAGAGTTAGGGCTGACATAAACGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCCTCAAGATCTCAGGGTCAAAGGCCAGATGGTGGTAATTCTGCACCTGTCACTTCATCTTCCCAAGTGCCTTCACAACAAACTCCATCTGCTTCACTTAGGGGAGTTGCTTCTGGTTATGGAAGCCCTTTAGAGTATAATGCATGTCAAATGAAAGGTGTCTTTATGCCAGCTCCATCTCCTTATGATCTATCCTCAAGTTCCCGATCGCAAACATCTATAGTGGGGGATGGAGAAACACAAAGAGACAATATTCCTGGGATTGGTGGTTCAATGAATAGTGTTGATGAGAAGCAGATTGCTGACATGCCCCCAAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTACGTGATGCTACCCTTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGGTTTGCTAAAGCAGCTGAGGGTATTGAAATCAATAAATGTTGATGGTGTTATGGTTGATTGTTGGTGGGGAATAGTGGAGGCCCATGCTCCGCAAGAGTATAATTGGAATGGTTACAAGAGGCTCTTTCAAATGGTGCGTGAGCTAAAGCTTAAGCTGCAGGTTTTGATGTCTTTTCATGAATGTGGAGGTAATTTTGGTGATGATGTTTGTATCCCATTACCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATATTTTTTACTGATAGAGAAGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGTCGGACTGCTGTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGTTTCATCTCCATGATTGAAGTTGGATTAGGTCCGTGTGGAGAGCTTAGATACCCATCTTGTCCTGTAAAACACGGGTGGAGATATCCTGGCATTGGTGAATTCCAGTGCTATGATCAGTACATGTTGAAAAGTCTTAGGAAAGCAGCAGAAATAAGGGGGCACTCTATCTGGGCTAGAGGGCCAGATAATGTGGGTACCTATAACTCTCAGCCACATGAGACAGGTTTCTTTTGTGATGGGGGTGATTATGATAGCTTCTATGGCAGGTTTTTTCTTAATTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTCTCCTTGGCAAAATTAGCTTTTGAGGGTTCCTGCATAGCTGCAAAGCTATCAGGTATTTACTGGTGGTACAAGACTGCCAGTCATGCTGCAGAATTAACTGCTGGGTATTATAACCCATGCAATCGTGATGGCTATGCTTCAATTATGACTATGCTAAAAAGAAACGGAGTTAGCTTAAATATTCCTTGTGTTGACCTTCAGACGTTGAACCAACATGAGGGCTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTAAATGCTGGGTGGGATGTTGGCCTACCAGTTGTCAGTGAGAATGCGCTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATAATGCCAAGCCTATGAATGATCCAGATGGAAGACACTTTTCATCGTTTGCTTACCCGAGGCTTAGTCCACTTCTTATGGAACGACAGAATTTCATAGAGTTTGAACGATTTGTCAAGAGAATGCACGGGGAAGCTGTTCTTGACCTTCAGATTTAA 2100 0.441 MATDMQRFVGTSEDDEEMGMGVKDEDEDDDDYDENGEDGNAPGMIEIDDGNGIQTAPGDNRFQQHQQFQELEEPGGGARRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQRPDGGNSAPVTSSSQVPSQQTPSASLRGVASGYGSPLEYNACQMKGVFMPAPSPYDLSSSSRSQTSIVGDGETQRDNIPGIGGSMNSVDEKQIADMPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSINVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVLMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGFISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEIRGHSIWARGPDNVGTYNSQPHETGFFCDGGDYDSFYGRFFLNWYSQVLVDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYASIMTMLKRNGVSLNIPCVDLQTLNQHEGFPETFADPEGLVWQVLNAGWDVGLPVVSENALPCLNRVSYNKVLDNAKPMNDPDGRHFSSFAYPRLSPLLMERQNFIEFERFVKRMHGEAVLDLQI* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3093 699 MobiDBLite consensus disorder prediction 1 94 - -
Lja1g3093 699 SUPERFAMILY (Trans)glycosidases 258 694 IPR017853 -
Lja1g3093 699 MobiDBLite consensus disorder prediction 142 179 - -
Lja1g3093 699 Pfam Glycosyl hydrolase family 14 265 684 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 MobiDBLite consensus disorder prediction 205 223 - -
Lja1g3093 699 PANTHER - 74 699 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 MobiDBLite consensus disorder prediction 56 70 - -
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 574 597 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 296 310 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 505 524 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 556 567 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 539 555 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 339 360 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 317 335 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 614 636 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 432 454 IPR001554 GO:0000272|GO:0016161
Lja1g3093 699 MobiDBLite consensus disorder prediction 142 180 - -
Lja1g3093 699 Gene3D Glycosidases 253 698 - -
Lja1g3093 699 MobiDBLite consensus disorder prediction 204 240 - -
Lja1g3093 699 MobiDBLite consensus disorder prediction 75 94 - -
Lja1g3093 699 PANTHER BETA-AMYLASE 74 699 - -
Lja1g3093 699 MobiDBLite consensus disorder prediction 18 37 - -
Lja1g3093 699 Pfam BES1/BZR1 plant transcription factor, N-terminal 77 212 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3093 Lja-Chr1 37670506 37678386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3093 1 696 Glycoside Hydrolase AT2G45880 65.808 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Lja1g3093 Glyco_hydro_14 8.8e-103 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3093 K01177 - gmx:100805560 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3093 1 37670506 37678386 Lja1g3093 1 37670506 37678386 ECH