Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3086 ATGGCTGTGGTGTGTCCTGTGCCTGCAACAACACAAAGGAGTGGTTCTGTGAGTTCTGTTGGTGAAATTGTGGGGGAAATTGCAGAGGAGCCTAATCCAACTATGGTTGATGAACCAATCTATGTTGCTGTGTCAAAGGATATAAAAGAGAGCAAATTGAATCTGATATGGGCCATTCAGAACTCTGGAGGGAAGAGGATTTGCATCCTCTTTGTTCATGTGCCTGCAACAATGATACCCTTGATGGGTGCCAAATTTCCTGCAAGTTCACTGAAAGATCAGGAAGTCCGAGCATACCGGGAAATTGAAAGGCAAAACATGCACAAGACTCTGGATGAGTATCTTCGTATCTGTCAACGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGACAGCATTGAAAGAGGAATTCTAGAACTTGTCTCCCAGTATGGTATCCGAAAGCTTGTTATGGGAGCAGCATGTGATAAGCACTATTCTAGGAGAATGGTGGACCTCAGATCTAAGAAAGCCATCTATGTATGTGAACGAGCTCCAGCTTCTTGTCATGTACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTTGGATCAACGCAATGCCGAGGCTGCATCTCTTTTGGTGCAGCAAGTACCAAACTTGGTGAGATCTTTGAGATCTCAATCACTGGGGCAAAATCTTCAGGCGAGTTCACATAATGCTGCTCAAGAGTTATATCGCAGAGCAAGATCTACCAATGATATCGCAGTTTCTTCTCCCGACGACACTGAAGGTTTTTCAACCCCACGTAATAGGGTGGGTACAGAAGTAAGTTCTGATGAATCAGAACGACCATCAAGGAGGAGTCCTTCAGGATTTTCAACATGCTCTGACGGTGCAATTGAAGCAGCATTGACCCCGAATTTGATTAATGAGATCAGTGAGAATGTAATAGATTTGACTTTGAGTCACCTGATTAAAGAGGATCTTCGTCATTCATCTCCTCCCAGTGTACTGCAGGATGGTGGAATGAATGATACTCTCTATGACCAACTTGAACAGTCTATGGCTGAGGCTGAGAATGCTACGCGACATGCATACCAAGAAACTTTTAGGCGTGGGAGAGCCGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAGCTGCTGAAAGCTTATATGCAGAGGAGTTGAATCTGAGGAAAATGGCTGAGGAAGAACTAGAAACAGAAAAAGAAGAACTTGAGAATTTGAAGAGCCAGGCAGACAAGGTTAAGGAAGAACTCCGGCTTGCCCAGGATCAGAAGTCATCACTAGAGAGTCAACTTGCATCATCTGAACTTATGGTAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGATCTTTTACAAAACTACAAGAACGAACGAGAAGAATTGGAGGTGCAGCGTGATAGTTTATTGAGAGAGGCAGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCAAGCTCCCACGTGTCTCAATTGTTTTCAGAATTCTCATTTTCAGAGATCGAAGAAGCAGCAGGTAACTTCAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCCTTCGTCACACTGAGGTAGCTATAAAAATGTTGCACCCCAACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTCTTGAGCAAGCTAAGACATCCCAATCTTATCACACTTATAGGAGCCTGCCCAGAATCCTGGGGCCTTGTCTATGAGTATTTACCGAATGGTAGCCTTGAAGACCGTCTTGTTTGCAAGGATAATACACCTCCGTTATCATGGCAAACTCGGATTCGCATTGCTGCTGAACTGTGCTCTGCCCTCATCTTTCTCCATTCCTGTAAACCTCACAGCATAGTGCATGGTGACCTAAAACCCTCAAATATTCTCCTAGATGCAAACCTTGTTAGCAAGCTTAGTGACTTCGGAATCTGTCGCATATTATCTAATCGCAGTTCTAGTGATAATGCTACACAGTTATGGAGAACTGACCCAAAGGGAACTTTTGTATACATGGATCCTGAATTCCTTGCTTCCGGGGAGCTTACTCCAAAGTCGGATGTTTATTCATTTGGAATCATACTGATGAGGTTGTTGACTGGGAGACAAGCCTTGGGAATATCAAAGGAGGTGAAATATGCAGTAGATACTGGAAAGTTGAAATCCTTACTGGATCCTTTGGCTGGAGACTGGCCCTTTGTGCAGGCCGAACAGCTGGCTCACTTGGCCTTGCGGTGTTGTGAGATGAGCAGAAAGAGCCGTCCGGACCTGTGCTCGGATGTTTGGAGGATACTGGATGCAATGAGGGCTTCTTCTGGAGGCACAAATTCCTTTGGACTAAGTTCTGAAGGGCTCCACCAACCTCCTTCTTATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTCACTTATGAAGCTGAGGCTATACGAGGATGGCTTGACAGTGGTCATGACACTTCACCAATGACAAATAGTAAGCTTGCACATCAGAATCTTGTTCCCAACCGCGCCCTTCGCTCTGCAATCCAGGACTGGCTTCAAAGTCAATGA 2628 0.4475 MAVVCPVPATTQRSGSVSSVGEIVGEIAEEPNPTMVDEPIYVAVSKDIKESKLNLIWAIQNSGGKRICILFVHVPATMIPLMGAKFPASSLKDQEVRAYREIERQNMHKTLDEYLRICQRMGVRAEKLHIEMDSIERGILELVSQYGIRKLVMGAACDKHYSRRMVDLRSKKAIYVCERAPASCHVQFICKGHLIHTRDRSLDQRNAEAASLLVQQVPNLVRSLRSQSLGQNLQASSHNAAQELYRRARSTNDIAVSSPDDTEGFSTPRNRVGTEVSSDESERPSRRSPSGFSTCSDGAIEAALTPNLINEISENVIDLTLSHLIKEDLRHSSPPSVLQDGGMNDTLYDQLEQSMAEAENATRHAYQETFRRGRAEKDAIEAIRRAKAAESLYAEELNLRKMAEEELETEKEELENLKSQADKVKEELRLAQDQKSSLESQLASSELMVKELEQKIISAVDLLQNYKNEREELEVQRDSLLREAEELRKKQGEASSSHVSQLFSEFSFSEIEEAAGNFNPSLKIGEGGYGSIFKGVLRHTEVAIKMLHPNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWGLVYEYLPNGSLEDRLVCKDNTPPLSWQTRIRIAAELCSALIFLHSCKPHSIVHGDLKPSNILLDANLVSKLSDFGICRILSNRSSSDNATQLWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILMRLLTGRQALGISKEVKYAVDTGKLKSLLDPLAGDWPFVQAEQLAHLALRCCEMSRKSRPDLCSDVWRILDAMRASSGGTNSFGLSSEGLHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSKLAHQNLVPNRALRSAIQDWLQSQ* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3086 875 MobiDBLite consensus disorder prediction 250 274 - -
Lja1g3086 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Lja1g3086 875 ProSitePatterns Protein kinases ATP-binding region signature. 524 545 IPR017441 GO:0005524
Lja1g3086 875 CDD RING-Ubox_WDSUB1_like 809 850 - -
Lja1g3086 875 Gene3D Transferase(Phosphotransferase) domain 1 591 794 - -
Lja1g3086 875 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 51 155 - -
Lja1g3086 875 Coils Coil 348 368 - -
Lja1g3086 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 875 IPR013083 -
Lja1g3086 875 Gene3D HUPs 34 156 IPR014729 -
Lja1g3086 875 SUPERFAMILY Protein kinase-like (PK-like) 495 774 IPR011009 -
Lja1g3086 875 MobiDBLite consensus disorder prediction 250 297 - -
Lja1g3086 875 CDD STK_N 39 192 - -
Lja1g3086 875 SMART Ubox_2 808 871 IPR003613 GO:0004842|GO:0016567
Lja1g3086 875 SMART serkin_6 518 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3086 875 Pfam Protein kinase domain 522 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3086 875 Coils Coil 386 490 - -
Lja1g3086 875 ProSiteProfiles U-box domain profile. 804 875 IPR003613 GO:0004842|GO:0016567
Lja1g3086 875 PANTHER U-BOX KINASE FAMILY PROTEIN 32 874 - -
Lja1g3086 875 Pfam U-box domain 806 874 IPR003613 GO:0004842|GO:0016567
Lja1g3086 875 Gene3D Phosphorylase Kinase; domain 1 487 590 - -
Lja1g3086 875 SUPERFAMILY RING/U-box 799 873 - -
Lja1g3086 875 PANTHER OS02G0152300 PROTEIN 32 874 - -
Lja1g3086 875 ProSiteProfiles Protein kinase domain profile. 518 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3086 Lja-Chr1 37478006 37484066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3086 1 873 U-box Gene Family AT2G45910 54.649 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja1g3086 Pkinase 4.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3086 - - lja:Lj1g3v2661410.1 1558.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3086 1 37478006 37484066 Lja1g3086 1 37478006 37484066 ECH
Lja3g1882 3 21570730 21582174 Lja1g3086 1 37478006 37484066 ECH
Lja1g3086 1 37478006 37484066 Lja3g1882 3 21570730 21582174 PCT