Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3074 ATGTTGGGTAGTGAGCAACCTCTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAAGGCGGTTATGATGCGGTTTGTAAGAACGGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGAGCGTCTGTGGAAATGGTTTACAGTAAGCATTTGAGTTCTCTTGAGACATGGCTGAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGATTTAGTGAATGATAGAGTTCAATTCGGCAAGCGTTTGATGGAGGTTCAAGCTGGATTCATGTTGGATGGTGATGATGATGATGAAAAGGTCAAGAGGGTGGTATATGGCTACCTAGATGGGAGGAAGTTGTGGGGTACAAATAGAGTGAAGGGCTTTAATCCAGAGTTGAATGTGGCTGAACTTGAGACGGTGTATGACTATCTAGATGGGAGGAAGTCGTGTGGTGCTAATAGAGCGCAGAGCAAGAATCCTGAGTCTAATGGGGTCAAGAAAGTTCAGAATGGAGGGCTCGTTGATTCTAATATGCAGGACCATTGGGCGAATGAGCCTAGTCTCGGAAACTTCTGCAACCATACAGATGCCATGGAAACACTGAAAGAGTTTGATGCAGACAAAATATTAATAGTGGATGTATCTGGTATGATAAAAAACATGCCTGGATTATCTGATGGAGGCAAGAGATGCGAGAATGATAGTCACAATGTCGATGTAGTGAAATTGGATCCATCAAGTGTTAATAAAGAGAGCTCTGGTCGTAAGAGGAAGAGAAATTCTAGGTCGGAGATGCTAAGCTGGGTTAGTGGCATTGCAAAGAATCCTTGTGATCCTATAATTGCTTCAGTTCCAGAAAAGTCTAAGTGGAAGTCTTACAGTAATCAAGAAATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCATTCTTAAAAAAGGTTCTGAATCAAGCAGTGAACAGCAGGGTCCAAGGATGCATCCATCCATGTATGATGATAACTTTGGGGCAAATTACAATCTTAGGCAGAGGTTTCAATGTAACAAGAGCCCTTTATCTGGAAAATCTACATCAAATGGAGCCTCTTCATCTGGGCGAACAGGAAGAAGTTTAGAGAGAAACCCTGGTAAAAAGTCACATAACTCTGTGCTCTCACATCTGGACATTCCTCTAGGGCCAGACCATCAAGCTGAAATGCCTGAATGGTCTGACATGAGCTATGAGAGTGATTCCAAGTGGTTGGGGACCAAAATATGGCCAACAAAAGCTGTGAATTTCAATCTTCTTGAAAGGGACCCTATCGGAAAGGGAAGACAAGATTCATGTGGTTGCCAAGTACAAGGTTCTGTCGAGTGTGTCCGATTTCACATTGCTGAAAAAAGAGCTAAAGTGAAGATGGAATTGGGTGTGGCTTTTTATCGGTGGGAGTTACACAAGGTAGGTGAAGAAGTTAGTCATTCGTGGACAAAGCAAGAAGAGAAGAAATTCAAAGATGTGGTAAAAGCAAACCCGCCTTCATCGGATAGATGTTTCTGGGATCATATTTTTAAAGCATTCCCTATGAAGAGCAGGGAAGATTTAATCAGCTACTACTTCGACGTCTTCCTCTTGCAGCGCGTAGGACACCGAAGTCGGCACACTCCAGAGGACATTAAGAGTGATGATGACGAATCAGAATTTGGACCATTGAGGAATGTTTTTGGACGTCCGACCCATACCTTATTACCCCCTAAGAAATCACAGACAAAGGGGAGATAG 1758 0.4317 MLGSEQPLDLYKLFMVVKEKGGYDAVCKNGLWDLVGEEYGLGVKVGASVEMVYSKHLSSLETWLKNVADSKFPECDLVNDRVQFGKRLMEVQAGFMLDGDDDDEKVKRVVYGYLDGRKLWGTNRVKGFNPELNVAELETVYDYLDGRKSCGANRAQSKNPESNGVKKVQNGGLVDSNMQDHWANEPSLGNFCNHTDAMETLKEFDADKILIVDVSGMIKNMPGLSDGGKRCENDSHNVDVVKLDPSSVNKESSGRKRKRNSRSEMLSWVSGIAKNPCDPIIASVPEKSKWKSYSNQEIWKQVLLFREAVILKKGSESSSEQQGPRMHPSMYDDNFGANYNLRQRFQCNKSPLSGKSTSNGASSSGRTGRSLERNPGKKSHNSVLSHLDIPLGPDHQAEMPEWSDMSYESDSKWLGTKIWPTKAVNFNLLERDPIGKGRQDSCGCQVQGSVECVRFHIAEKRAKVKMELGVAFYRWELHKVGEEVSHSWTKQEEKKFKDVVKANPPSSDRCFWDHIFKAFPMKSREDLISYYFDVFLLQRVGHRSRHTPEDIKSDDDESEFGPLRNVFGRPTHTLLPPKKSQTKGR* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3074 585 SMART ELM2_2 389 439 IPR000949 -
Lja1g3074 585 MobiDBLite consensus disorder prediction 314 333 - -
Lja1g3074 585 MobiDBLite consensus disorder prediction 546 562 - -
Lja1g3074 585 Pfam ARID/BRIGHT DNA binding domain 5 60 IPR001606 GO:0003677
Lja1g3074 585 SMART bright_3 2 66 IPR001606 GO:0003677
Lja1g3074 585 MobiDBLite consensus disorder prediction 152 171 - -
Lja1g3074 585 MobiDBLite consensus disorder prediction 348 370 - -
Lja1g3074 585 CDD ARID 6 61 - -
Lja1g3074 585 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Lja1g3074 585 CDD SANT 487 531 IPR001005 -
Lja1g3074 585 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 583 - -
Lja1g3074 585 MobiDBLite consensus disorder prediction 348 395 - -
Lja1g3074 585 MobiDBLite consensus disorder prediction 546 585 - -
Lja1g3074 585 MobiDBLite consensus disorder prediction 243 264 - -
Lja1g3074 585 Gene3D - 2 73 IPR036431 GO:0003677
Lja1g3074 585 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 583 - -
Lja1g3074 585 Pfam Myb-like DNA-binding domain 487 533 IPR001005 -
Lja1g3074 585 MobiDBLite consensus disorder prediction 249 263 - -
Lja1g3074 585 SUPERFAMILY ARID-like 5 73 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3074 Lja-Chr1 37329629 37334534 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja1g3074 ARID 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3074 - - lja:Lj1g3v2692560.1 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3074 1 37329629 37334534 Lja1g3074 1 37329629 37334534 ECH
Lja1g3074 1 37329629 37334534 Lja3g1874 3 21437168 21440444 PCT