Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3072 ATGTCCAATGACAAGCTCATATACACACACTTATCATATTGCAAAGCAAAACTCTCCGACCGATCGAGTCCATTTGTTTACCTGGCCACTATCATGGCAAATCTGAATCATCAAGAAACATCCTCCGATGATTTCTTCTATGATGTTTTCCTGAGTTTTCGAGGTGAAGACGGCGACGGAAGGTTTACCGATCATCTCTTCACTGCTTTGCGACAAAAGGGAATCAACACTTTCAGACATGATAAGGAGCTCAAGTTTGGGGCGCCAGAATTAATCAGGCCTGACATTTTGAAAGCAATCCGAAATTCGAGGATGTTAATTGTTGTTCTTTCTCAAAACTATGCATCTTCCACTTGCTGTCTTGACGAACTTGCCGAGATCGTTGACTCTTATGACAAAAAAGGATCACAGGTTTTGATCATTTTTTATAAAGTGGAACCTTCTGATGTGTGGGACCTAAAAAATACTTATGCAGATGCTATGGCTGAACATGAAATAAGCTTCGAGAAAGACTTGGAGAAGGTCAAAACATGGAGGACAGCTTTGTCTAGGGTACGCGAACTCTCAAGAGAATATTGCAGTGACACCAAATCGAACTCTATCTCTGGCGCGGCGTCTTCGGTTTCGGTTTCTGGAGCTCTGTTTGACACTCCAGGCCTCGACCTCTCTCTCCCTCCCTTCAAAGCCTTCGTCAAGCAGATCGTGCAAGCTTTTCTCGAAGAGAAGCAGCAACAGCTAGATGAAGAACAACAAGAACAACAAGGAGTTACCCAGGACAAGGAGTTCGATGACGATGGCGATCTCATCATCTGCAAGCTTTCGGAGAAGAGGAAGGTGACGATTCAGGATTTCAGAGGGAAAACACTGGTCTCCATTAGGGAGTATTACAGAAAGGACGGCAAGGACCTACCTACTTCAAAAGGTGCTTGTATTTTCAATTCTGCTCTTTGCATACCTAGAGGAAAAACAATTTTGGATTGTGGGTTTTCAATATTTTCTTTCTTTTGGTGGTTATTTGAAAAGAGTTTAGCTATATTGATATTGATTCCTCTTCCACATCGGTGA 1065 0.4263 MSNDKLIYTHLSYCKAKLSDRSSPFVYLATIMANLNHQETSSDDFFYDVFLSFRGEDGDGRFTDHLFTALRQKGINTFRHDKELKFGAPELIRPDILKAIRNSRMLIVVLSQNYASSTCCLDELAEIVDSYDKKGSQVLIIFYKVEPSDVWDLKNTYADAMAEHEISFEKDLEKVKTWRTALSRVRELSREYCSDTKSNSISGAASSVSVSGALFDTPGLDLSLPPFKAFVKQIVQAFLEEKQQQLDEEQQEQQGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGACIFNSALCIPRGKTILDCGFSIFSFFWWLFEKSLAILILIPLPHR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3072 354 Pfam TIR domain 47 254 IPR000157 GO:0007165
Lja1g3072 354 Gene3D Transcriptional Coactivator Pc4; Chain A 260 316 IPR009044 GO:0003677|GO:0006355
Lja1g3072 354 SUPERFAMILY ssDNA-binding transcriptional regulator domain 270 311 IPR009044 GO:0003677|GO:0006355
Lja1g3072 354 Gene3D - 40 212 IPR035897 -
Lja1g3072 354 Pfam Transcriptional Coactivator p15 (PC4) 271 309 IPR003173 GO:0003677|GO:0006355
Lja1g3072 354 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 188 IPR035897 -
Lja1g3072 354 PANTHER TMV RESISTANCE PROTEIN N-LIKE 44 197 - -
Lja1g3072 354 PANTHER TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN 44 197 - -
Lja1g3072 354 Coils Coil 232 259 - -
Lja1g3072 354 ProSiteProfiles TIR domain profile. 45 182 IPR000157 GO:0007165
Lja1g3072 354 SMART till_3 46 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3072 Lja-Chr1 37270306 37276902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3072 47 182 Miscellaneous Gene Families AT5G44900 31.618 1.34e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lja1g3072 TIR 5.6e-35 CL0173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3072 - - lja:Lj0g3v0117929.1 337.421