Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3071 ATGTGTGATCTAGTATCTATCGCTCGTAACCATTTGCTTCCACTGTTAGCAGAAGCAGCCAATATGATCAGGCGCGCCCCAGTAGAAGTTGAAACCATGAAAAAGCAACTCGAAAGGATTCAAGACATGATCCATGAAGCAGATAGAAAGGCTTCAGGAGAAGCAGACAACCTCAAGCGTGACGAAATCAAGGAAATGATGAAGGAGCTGATAGAAGCATCTTTTCAAATGGAAGATGTCTTGGACGAGTACATCTTGTGTGAGCAACAACTAGAATCTCGTGATCCTGGATGTGTAGCGTTCAATCCTGAAGAGGCTGCTAACTTCATCAGACCTATGATCACACGCGTTCAGCTGGCGTACAAGCTTCAACACCTTAACTCACGAATTCGTGAAACCAAGGAAAGGTGTCAGATTCATGATGGATCTTCTTCGGAACAAGGAGAATGTGGTTCTAGTTCTGGAGGATACCAAGACCCCATAGTGCGAAACCTTCGAGAGCAGGCTCCTCTCTACATAAAGGAAGTTGACGTTGTGGGATTTGAAGTCCCTAAAGCTGATTTGATTTATTGGTTGGTGGAGGGACAAGAAGAACGTACTGTGATCTCTGTGGTAGGGATGGGAGGGCAGGGTAAAACCACTCTTGCCAGGAAAGTTTTTGAAAGCAAGGAGGTAATTGCACACTTTGATTGTCATGCATGGATCACAGTATCACAAACCTTCAGTGTAGAAGGATTGTTGAGAGACATGCTGCGACACTTTTACAAAGACACATTTGTTGCCGATATTTCAACAATGGATCGAAAGTCACTGGAGGATGAGGTGAGGAAGTACTTGAAGCTAAAGAGGTATGTCGTCTTCCTTGATGATATATGGGATACAAAGTTATGGGATGAGATTGAATATGTCATGATTGATAATACAAAAAGAAGTAGGATATTCATCACAACTAGAAAAAGGGAGGTTGCACTGTACTTTAAGAAATCTTCTATTGTTAAAGTGCATGATTTGCAACTTTTAGATGAAAATAAATCTTTTAAGTTATTTTGTAAGAAAGCATTTTGGTCTGACTTTGGTGGATTTTGTCCAAAAGAACTCAAGGATGTGTCTCTTGAAATTGTTAAAAAGTGTGAGGGTTTGCCACTAGCCATTGCGGTCATTGGTGGTGTTTTATCTACCAAAGATCAATCTGAGTGGACAAGTTTTAGTAAAAATCTAAGTTCAGAGCTGGAAAATAATCCTCATCTAGATAGTGTAACAAAGATTTTAATTTCTAGTTATGATGAATTGCCTTCCAATCTCAAACCATGCTTGTTGTATTTTGGAATATATCCTGAAGACTACGTAGTTAATTCAAAGAGACTGATTCGGCAATGGGTAGCCGAAGGGTTTGTCAAACAACAAGGGATAAAATCTCCCGAAGAAGTAGCAGAAAAATATTTGACCGAATTGATCCATAGAAGCTTGGTGCATGTATCTTCATTGGCCATTGATGGCAAAGTTAAAAGTTGTCGCGTTCATGACCTGTTACGTGAATTGATCCTTAGAAAAATAGAGGAGTTAAACTTTTGCCATTGTATGCATGAAGATGATCATGATCGGTCAATGTCGTTAGTTTTAAGTGGCAAAAGTCGTCGCCTGTCTATAGCAACAATTTCCAGAGGTTTATTGGGAAACACCGAAAGCTCACACATTCGGTCTTTACTTTGTTTCACCAAGGGAGAATTGGTTGATAACATTGATAGTATGCGAAGAATCCCTGCAAAATACAGGCTGCTAAAGCATCAAATCATCTGGAAGTCAAGAGCATTGGATCATCAAGCATGTGCCCCAAGTAATAGTTTGAAGATTCAAGAAAAGGTACTGGGTTTCCACTTGTATGAAATTCGGATTCTCCACCAAGCCTTTGACAAAATTAACTTGGTATCTTTCTACTTACGGTGA 1944 0.3997 MCDLVSIARNHLLPLLAEAANMIRRAPVEVETMKKQLERIQDMIHEADRKASGEADNLKRDEIKEMMKELIEASFQMEDVLDEYILCEQQLESRDPGCVAFNPEEAANFIRPMITRVQLAYKLQHLNSRIRETKERCQIHDGSSSEQGECGSSSGGYQDPIVRNLREQAPLYIKEVDVVGFEVPKADLIYWLVEGQEERTVISVVGMGGQGKTTLARKVFESKEVIAHFDCHAWITVSQTFSVEGLLRDMLRHFYKDTFVADISTMDRKSLEDEVRKYLKLKRYVVFLDDIWDTKLWDEIEYVMIDNTKRSRIFITTRKREVALYFKKSSIVKVHDLQLLDENKSFKLFCKKAFWSDFGGFCPKELKDVSLEIVKKCEGLPLAIAVIGGVLSTKDQSEWTSFSKNLSSELENNPHLDSVTKILISSYDELPSNLKPCLLYFGIYPEDYVVNSKRLIRQWVAEGFVKQQGIKSPEEVAEKYLTELIHRSLVHVSSLAIDGKVKSCRVHDLLRELILRKIEELNFCHCMHEDDHDRSMSLVLSGKSRRLSIATISRGLLGNTESSHIRSLLCFTKGELVDNIDSMRRIPAKYRLLKHQIIWKSRALDHQACAPSNSLKIQEKVLGFHLYEIRILHQAFDKINLVSFYLR* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3071 647 Pfam Rx N-terminal domain 5 92 IPR041118 -
Lja1g3071 647 PANTHER DISEASE RESISTANCE PROTEIN RP 29 580 IPR044974 GO:0006952
Lja1g3071 647 Gene3D - 161 334 IPR027417 -
Lja1g3071 647 Gene3D - 5 126 - -
Lja1g3071 647 Pfam NB-ARC domain 187 429 IPR002182 GO:0043531
Lja1g3071 647 Gene3D - 428 517 IPR036388 -
Lja1g3071 647 CDD RX-CC_like 5 135 IPR038005 -
Lja1g3071 647 PANTHER - 29 580 - -
Lja1g3071 647 Gene3D - 339 427 IPR042197 -
Lja1g3071 647 MobiDBLite consensus disorder prediction 134 155 - -
Lja1g3071 647 PRINTS Disease resistance protein signature 377 391 - -
Lja1g3071 647 PRINTS Disease resistance protein signature 201 216 - -
Lja1g3071 647 PRINTS Disease resistance protein signature 278 292 - -
Lja1g3071 647 Coils Coil 30 50 - -
Lja1g3071 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 441 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3071 Lja-Chr1 37262627 37265629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3071 202 394 WRKY Transcription Factor Family AT5G45050 27.835 4.01e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3071 K13457 - gmx:100782760 535.028