Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3070 ATGTGTGATCCAGTGTCCATTGCTCGTAACCATTTGCTTCCACTGTTAGCAGAAGCAGTGAATATAATCAGGCAGACTCCAGTAGAAGTTAAAGCCATGAAAAAACAACTCGAAAGGATTCAAGACATGATCCATGAAGCGGATAGAAAGGCTTCAGCAGAAGCAGATAACCTCAAGCGTGACGAAATCAAGGAAATGATGAAGGAGCTGATAGAAGCATCTTTTGAAATGGAAGATGTCTTGGATGAATACATTGTGTGTGAGCAACAACTGCAATCTCGTGATCCTGGATGCGTAGCATTCAATCCAGAAGAGGCAGCTAACTTCATCAGACCTATGATCACCCGTGTTCAGGTGGCCTACAAGATTCAGCGCGTTAACACGCGATCTCGTGAAATGAAGGAAAAATGTCAGATTCATGATTCTTCAGAACAAGGAGAAGGTGGTCCTAGTTCTCGAGGAAGCCAGGACCCTGCGGTGCGGAACCTTCGAGAGGAGGCTCCGCTTGACATTAGGGAGACTGATGTTGTTGGCTTTGATGTCCCGAAAGTGAAATTGATTGGTTGGTTGGTGAAGGGACGAGAAGAACGCACTGCGATCTCTGTGGTAGGGATGGGAGGGCAAGGGAAAACCACTCTTGCTAGAAAAGTTTTTGAAAGCAGTGATGTTGTTAAGCACTTTCATTGCCATGCATGGATCACTGTCTCTAAGTCATACACCGTGGAAGGATTGTTGAGGGACATGTTGCAGCAGTTTTGCAAAGAAAAAAATGAAGATCCTCCTCAGAAAATCTCAATGATGGATCCCACATCATTGAAAAATGCAGTGAAGGACTACATGCGGCGAGGAAGGTATGTTATCTTCTTCGATGATGTGTGGGATACACAATTTTGGGACAAGATTGAATATGCTTTGATTAATGATACTAAAGGAAGTAGGATATTGATCACAACCAGGAATAAGGATCTATTTTATAAAAAGGCGTTTTGGTCCAAGTTTGATGGACGTTGTCCAGAAGATCTGAAGGATGTGTCTAGTGAAATTGTCAAAAAATGTGACGGTCTACCTCTAGCAATTGTGACCATTGGTGGTATTTTATCTACCCAAGATCCAAATGCAATTGAGTGGAGGAAGTTGTGTGAAAATCTAAGTTTAGATAGTGTAACCAAGATTTTAAGTCTCAGTTATGATGATTTGCCCTCTTATCTCAAACCATGTCTGTTGTATTTTGGAATGTATCCCGAAGACTTTATAGTTGAATCCAAGAGACTGATTCGACAATGGGTAGCTGAAGGGTTCATCAAACAACAAAAGGAAAAAACACCAGAGGAAGTTGGCAAAGTGTATTTGAAAGAGCTGATTCAAAGAAGTTTGGTGCAAGTATCATCATTTACCATTGATGGCAAAGTTAAAAGTTGTCGTGTTCATGACCTGTTACGTGAAATATATGATCCTTAG 1458 0.415 MCDPVSIARNHLLPLLAEAVNIIRQTPVEVKAMKKQLERIQDMIHEADRKASAEADNLKRDEIKEMMKELIEASFEMEDVLDEYIVCEQQLQSRDPGCVAFNPEEAANFIRPMITRVQVAYKIQRVNTRSREMKEKCQIHDSSEQGEGGPSSRGSQDPAVRNLREEAPLDIRETDVVGFDVPKVKLIGWLVKGREERTAISVVGMGGQGKTTLARKVFESSDVVKHFHCHAWITVSKSYTVEGLLRDMLQQFCKEKNEDPPQKISMMDPTSLKNAVKDYMRRGRYVIFFDDVWDTQFWDKIEYALINDTKGSRILITTRNKDLFYKKAFWSKFDGRCPEDLKDVSSEIVKKCDGLPLAIVTIGGILSTQDPNAIEWRKLCENLSLDSVTKILSLSYDDLPSYLKPCLLYFGMYPEDFIVESKRLIRQWVAEGFIKQQKEKTPEEVGKVYLKELIQRSLVQVSSFTIDGKVKSCRVHDLLREIYDP* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3070 485 MobiDBLite consensus disorder prediction 132 160 - -
Lja1g3070 485 Gene3D - 396 484 IPR036388 -
Lja1g3070 485 Gene3D - 5 126 - -
Lja1g3070 485 MobiDBLite consensus disorder prediction 144 158 - -
Lja1g3070 485 PANTHER DISEASE RESISTANCE PROTEIN RP 27 482 IPR044974 GO:0006952
Lja1g3070 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 410 IPR027417 -
Lja1g3070 485 Coils Coil 63 83 - -
Lja1g3070 485 PRINTS Disease resistance protein signature 199 214 - -
Lja1g3070 485 PRINTS Disease resistance protein signature 279 293 - -
Lja1g3070 485 PRINTS Disease resistance protein signature 352 366 - -
Lja1g3070 485 CDD RX-CC_like 5 135 IPR038005 -
Lja1g3070 485 Gene3D - 326 395 IPR042197 -
Lja1g3070 485 Gene3D - 157 325 IPR027417 -
Lja1g3070 485 Coils Coil 30 50 - -
Lja1g3070 485 Pfam Rx N-terminal domain 5 93 IPR041118 -
Lja1g3070 485 PANTHER - 27 482 - -
Lja1g3070 485 Pfam NB-ARC domain 185 323 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3070 Lja-Chr1 37258449 37259984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3070 173 387 WRKY Transcription Factor Family AT4G12020 25.424 9.58e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3070 K13457 - gmx:100806153 457.603