Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3069 ATGGGGTTTCCCGCAGGGTATCATGAGGTCTTACTCCCCAAACTGTTCCTCCACCTTCTCTTCCTCCTCGCCTCTCTCCGCTCCGCCGTCTCCTCCCTCTTCCGCCTCCTCCACCTCTCCGACCTCCTCGACACCGACGACCTCGCCGCCGCCTCACCGGACCTCCCCCACCAGACCCCCACCCCTACACTCTCCGCAATCCTCATCCGGGAACTCCTCCCCGTCGCCACGTTCCGAGACCTTACCGGAGTACCCTCTCCGGCGGTGGCGGCGGGGTGCGCGGTGTGCCTGTGCGAATTCTCCGAGGAAGAGGAGATCAGGTGTATGGCGAACTGCAGACACATTTTTCACCGCGCGTGTGTGGACCGTTGGATTGATCATGATCAGAAAACTTGTCCACTTTGTAGGACCCACTTTGTCCCTCATCATAAAATGGAAGACTACAATCAACGCCTCTGGGATGCTTCTGGTGCTTCTCAGTTTTGTACACTGAATGATGAAGATGCTTCCCTTTGA 516 0.5775 MGFPAGYHEVLLPKLFLHLLFLLASLRSAVSSLFRLLHLSDLLDTDDLAAASPDLPHQTPTPTLSAILIRELLPVATFRDLTGVPSPAVAAGCAVCLCEFSEEEEIRCMANCRHIFHRACVDRWIDHDQKTCPLCRTHFVPHHKMEDYNQRLWDASGASQFCTLNDEDASL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3069 171 SUPERFAMILY RING/U-box 92 148 - -
Lja1g3069 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 141 IPR013083 -
Lja1g3069 171 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 166 - -
Lja1g3069 171 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Lja1g3069 171 Pfam Ring finger domain 93 136 IPR001841 -
Lja1g3069 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 166 - -
Lja1g3069 171 SMART ring_2 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3069 Lja-Chr1 37235481 37236467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3069 1 170 C3H Transcription Factor Family AT1G63840 45.614 5.04e-50 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3069 1 37235481 37236467 Lja1g3069 1 37235481 37236467 ECH
Lja1g3069 1 37235481 37236467 Lja3g1866 3 21302174 21303115 PCT