Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3064 ATGGAAGACAACGGCGATGATGGAGAACGGCCCGAGTCCTCATCGGACGAGTCAACACGGCCGGAATCGGAGGACGAACCCGGCGTCGCGGAGGTGGAGGAGGTGCAGCGAGTCATCGAATCGGTGGTTCAATTCGGCGAGTACCGGAGGACGCAGCGGAAGGAGTCTCACAACCTCGCGCGGCGTTTCAAGCTCATGCTTCCTCTCATGGAAGACCTCCGTGACCTTCAACCTCCCGTTCCTGAAAACGGCGTCGTTTGGTTGGTGAATCTCAGGGACGCGCTTCTCTGTGCTAGGGACTTGTTGAGATTGTGCAGCCAAGGAAGCAAGATCCATCTCGCATTGGAGAGCGAGGCGGTTATGATAAGGTTTCAGAATGTGTATGAAAAATTGAGCCAAGCGTTTGATGGTGTTCCTGCTGATGAATTGGGTATCTCAGATGAGGTCCAAGAACAGCTTGAGTTAATGCACGTGCAACTCAGGCGAGCCAGAAGAAGGACCGATACACAGGACATAGAACTTGCAATGGATATGATGGTGGTGTTCTCTGATGAGGATGACCGCAATGCTGATAGTGCTATTGTTGAGAGGCTGGCAAAGAAGCTGGAGCTTCACACTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTAGGAACCTTGCTACAGAAAGAAAAGGGCAACAGGCTGATAGTACCCAACGGATAATTAAACTTCTAAACAAGTTCAAACAAATTGCAGGCATGGAAGAAAGCAATGTCATTGATGATCCTGTCATGCCCAAGATGCTTGGAAGGAGCACCTCTCTGGTCATTCCTCATGAGTTTCTATGCCCAATAACACTAGAAATCATGACCGATCCTGTTATTGTTGCCAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTTGAATCCAGCCATAACACCTGCCCAAAGACAAGACAACCTCTGGCTCACCTACAACTAGCACCAAACTGTGCCTTAAAGAACTTGATTGAGGAGTGGTGTGAGAGCAACAACTTCAAACTTCCTAAAAAATACACTGCAGCTCAAGAAAGCTGTCCCATTGAGAACAAAGAGGAGATCCCATCTTTGGTTGAGAGCCTCTCTTCCATTCACTTGGAGGAGCAGAGAAAGGCGGTGGAGAAGATTCGTATGTTGTCAAAGGAAAACCCTGAGAACCGGGTTTTGGTTGCTGAGCATGGAGGAATACCACCACTAGTACAACTATTATCCTATCCAGACTCAAAAATACAAGAGCATGCAGTGACAGCACTTTTAAATCTTTCAATTGATGAGGGTAACAAGAGACTCATATCCACAGAAGGGGCAATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTGCTGTGGCTAAAGAAAATTCAGCTGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGCTTAAAGAGATGGTGGGTTTATCAAATGGGATTCCACCATTGGTTGAGTTGTTAAGAACTGGGACAGTTAGAGGGAAGAAAGATGCTATTACAGCACTTTTCAACTTGTCTCTAAGTCATGCAAACAAAGGTAGGGCCATTAGAGCTGGCATTGTGCCACCTTTGCTTGCTCTGCTCAAACAAACAAACTTGGGCATGATTGATGAAGCACTCTCCATTTTACTTCTTCTTGCATCAAATCCAGATGGAAGACAAGAGATTGGAGAGCTCTCCTTCATTGAAACTCTTGTAGAGTTCATCAGAGAAGGAACCCCCAAGAACAAGGAATGCGCAGCTTCTGTTCTGCTTGAGTTGTGTTCAAATAACTCATCGTTTATACTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTGGCTGAGATCAAAGAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTATCTTAGAGCTCATAACCAGGAGTGAACAAATTTAA 1932 0.4581 MEDNGDDGERPESSSDESTRPESEDEPGVAEVEEVQRVIESVVQFGEYRRTQRKESHNLARRFKLMLPLMEDLRDLQPPVPENGVVWLVNLRDALLCARDLLRLCSQGSKIHLALESEAVMIRFQNVYEKLSQAFDGVPADELGISDEVQEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIVERLAKKLELHTVEDLEVETVAVRNLATERKGQQADSTQRIIKLLNKFKQIAGMEESNVIDDPVMPKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFESSHNTCPKTRQPLAHLQLAPNCALKNLIEEWCESNNFKLPKKYTAAQESCPIENKEEIPSLVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISTEGAIPAIIEVLENGSAVAKENSAAALFSLSMLDELKEMVGLSNGIPPLVELLRTGTVRGKKDAITALFNLSLSHANKGRAIRAGIVPPLLALLKQTNLGMIDEALSILLLLASNPDGRQEIGELSFIETLVEFIREGTPKNKECAASVLLELCSNNSSFILAALQFGVYEHLAEIKESGTNRAQRKANAILELITRSEQI* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3064 643 SUPERFAMILY RING/U-box 270 346 - -
Lja1g3064 643 Coils Coil 146 166 - -
Lja1g3064 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Lja1g3064 643 MobiDBLite consensus disorder prediction 11 31 - -
Lja1g3064 643 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 23 641 - -
Lja1g3064 643 SUPERFAMILY ARM repeat 361 639 IPR016024 -
Lja1g3064 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 342 IPR013083 -
Lja1g3064 643 CDD RING-Ubox_PUB 275 317 IPR045210 -
Lja1g3064 643 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Lja1g3064 643 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Lja1g3064 643 Gene3D - 28 139 IPR036537 GO:0007166
Lja1g3064 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Lja1g3064 643 SMART arm_5 475 515 IPR000225 GO:0005515
Lja1g3064 643 SMART arm_5 516 556 IPR000225 GO:0005515
Lja1g3064 643 SMART arm_5 434 474 IPR000225 GO:0005515
Lja1g3064 643 SMART arm_5 557 597 IPR000225 GO:0005515
Lja1g3064 643 SMART arm_5 393 433 IPR000225 GO:0005515
Lja1g3064 643 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Lja1g3064 643 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g3064 643 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Lja1g3064 643 Pfam Armadillo/beta-catenin-like repeat 477 514 IPR000225 GO:0005515
Lja1g3064 643 Gene3D - 343 642 IPR011989 -
Lja1g3064 643 PANTHER U BOX DOMAIN-CONTAINING 23 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3064 Lja-Chr1 37172673 37176742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3064 32 643 U-box Gene Family AT5G42340 63.725 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3064 - - cam:101489704 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3064 1 37172673 37176742 Lja1g3064 1 37172673 37176742 ECH