Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3060 ATGTCAATCTTCGATGGAGCTTTCAGGGATTCCCAGCTCAACCAAAAAACCTCAATCTTCGATCTTCGTCTCTTTGTTGTAATCGGAATCCTCATCGGAATCATAATCGTCTTCATCCTGTTCCTCATCTCTCTCTGTCTCGTCTCCCGCCGCCGCCACCGCCGCGCCGTCGCCGGCGATTACAAACCCACCGGCGTCCTTGCTCCGTCCAAGGGAATCCAGGAGATCGTGCATCTTCCGGGACCCCACATGCTCCGGCGGCCTACGCAGGCGAAGGTGCCGGAGATCCATGTGGATATCGGGAAGGCGGAGCACCGTGTGGTGGTGCAGTCTGAGAGGGTGTTGAGTGGGGAGAGCAAGGGGACAGTGGTGAGTGGGTGTGAAACGACGTCGTCGTTTGGGAGTGGCAGTGTTGGTGGTGGGAATGGGATTGGGCCTGAAGTGTCGCATCTTGGGTGGGGGAGATGGTACACACTGAGGGAGCTTGAGGATGCCACTGGTGGGTTGTGTCCGGAAAATGTGATTGGTGAAGGTGGCTATGGGATTGTTTATCATGGGGTCCTCAGTGATGGTACAAATGTTGCTGTCAAGAACCTGTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGTCACAAAAATCTTGTTAGGTTGCTTGGGTACTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGATTATGTTGACAATGGCAATCTAGAACAGTGGCTGCATGGGGATGTTGGAGATGTAAGCCCTTTGACATGGGATACACGCATGAACATCATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTGGAACCAAAGGTTGTCCACCGAGACGTGAAATCGAGCAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCCGAGAACAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTGGCACCAGAGTATGCTTGCACTGGAATGCTTACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAACTCCTGTTGATTATAGTAGACCAAAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCGAAGCTTCCTGAGATGCCATCTTCAAAGGCCCTTAAACGTGCCCTGCTGATTGCTCTTCGGTGTGTTGATCCCGATGCAACTAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCAGATGACCTGTTATTCCATAATGATCGCAGAACTGGGGAAGAATCTTCCCGTTCCCACCATGATTATCAACATGAGCATAAGGACTCAAGTTTAGATAAGAGGACAAATGGAGGGATCAATGATCAAAGTGAAGATGTTAGTGGTAGAAATCATCATCAGCCCCATTAG 1494 0.4866 MSIFDGAFRDSQLNQKTSIFDLRLFVVIGILIGIIIVFILFLISLCLVSRRRHRRAVAGDYKPTGVLAPSKGIQEIVHLPGPHMLRRPTQAKVPEIHVDIGKAEHRVVVQSERVLSGESKGTVVSGCETTSSFGSGSVGGGNGIGPEVSHLGWGRWYTLRELEDATGGLCPENVIGEGGYGIVYHGVLSDGTNVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYDYVDNGNLEQWLHGDVGDVSPLTWDTRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRTPVDYSRPKGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRRTGEESSRSHHDYQHEHKDSSLDKRTNGGINDQSEDVSGRNHHQPH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3060 497 Pfam Protein kinase domain 173 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3060 497 Gene3D Phosphorylase Kinase; domain 1 146 244 - -
Lja1g3060 497 MobiDBLite consensus disorder prediction 452 476 - -
Lja1g3060 497 MobiDBLite consensus disorder prediction 452 497 - -
Lja1g3060 497 Gene3D Transferase(Phosphotransferase) domain 1 245 456 - -
Lja1g3060 497 SMART serkin_6 169 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3060 497 SUPERFAMILY Protein kinase-like (PK-like) 148 441 IPR011009 -
Lja1g3060 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Lja1g3060 497 ProSiteProfiles Protein kinase domain profile. 169 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3060 497 PANTHER OS01G0323000 PROTEIN 1 492 - -
Lja1g3060 497 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Lja1g3060 497 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 492 - -
Lja1g3060 497 CDD STKc_IRAK 175 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3060 Lja-Chr1 37122339 37126643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3060 156 493 Trihelix Transcription Factor Family AT5G38560 45.115 1.41e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja1g3060 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3060 - - gmx:100817295 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3060 1 37122339 37126643 Lja1g3060 1 37122339 37126643 ECH
Lja1g3060 1 37122339 37126643 Lja3g1855 3 21159324 21162477 PCT