Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3051 ATGGAGGAAGATTGGGATCTCCATGCGGTGGTTAGAGGCTGTACCTCCACCGCCACCACCACCACCACCACCGCATCAGCACCAGCAGCATCATCCTCTGTTTCCTCCTCCTCTGTTTTCACCACTTGTTGCTTGCAGAAGCCTGAACTTTCTTCTTCATCTGGGTTCTCTATTCTTGAAGGTGAACAGGTTCTGTCTTTTCCTGCAGTAGCATACCCCTTTGAATCAAGAGACTCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCACTCCAAGCTTCTTCTCCTCTGTCCTCATTCTCTTTCTCCTCTTCTGCTGCACCCAAATCACAAGACAAACAGCAACAGAGGAGTAAGCAACCACACCATGGTGGTTCTGGTTCTGGTTCTGGTTCTGCCACCACCCCACGATCTAAAAGAAGAAAGACCCAGCTGAAGAAAGTTTGTCAAGTACCAGTTGAGAATCTTGCTTCAGATGTTTGGGCATGGAGGAAATATGGACAGAAACCCATTAAAGGGTCACCATATCCAAGGGGATACTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTCATTGTCACCTACACAGCAGAGCACAACCACCCTGCTCCTACTCACAGGAACTCTCTTGCTGGTTCCACCCGCCAGAAGCCTTTGACACCGGAAACTGCCGCCGCCGCCGGAGACTCTGACAAGGTAGTGACAAAACCTACTTCTCCGGCTACCTCAGGGGGAGAGGCAGAGGAAGGGGTTCCATCTCAGGGAGAAAAGTCAGAGAGCAGAGAAGATTTGATGATGGATGATGAGGAAGGAGAAGATGAATTTTTTGGGTTATCTGATATGGTGCTAACAGATGATTTCTTTGAGAGTTTAGATGATGAACTGAGTCAAATTACTGGCTCCTCTGATCCCTTTTCTGCTATTGCAATTCCTACTTGGGTAGCAGCCAATGGTGCTGGTGGAAGCTGA 1023 0.48 MEEDWDLHAVVRGCTSTATTTTTTASAPAASSSVSSSSVFTTCCLQKPELSSSSGFSILEGEQVLSFPAVAYPFESRDSIEELHELCKPFFSKSLQASSPLSSFSFSSSAAPKSQDKQQQRSKQPHHGGSGSGSGSATTPRSKRRKTQLKKVCQVPVENLASDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPETAAAAGDSDKVVTKPTSPATSGGEAEEGVPSQGEKSESREDLMMDDEEGEDEFFGLSDMVLTDDFFESLDDELSQITGSSDPFSAIAIPTWVAANGAGGS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3051 340 MobiDBLite consensus disorder prediction 217 291 - -
Lja1g3051 340 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 333 - -
Lja1g3051 340 Pfam WRKY DNA -binding domain 163 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3051 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 333 IPR044810 GO:0003700
Lja1g3051 340 MobiDBLite consensus disorder prediction 106 142 - -
Lja1g3051 340 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3051 340 MobiDBLite consensus disorder prediction 219 238 - -
Lja1g3051 340 Gene3D WRKY domain 145 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3051 340 ProSiteProfiles WRKY domain profile. 156 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3051 340 MobiDBLite consensus disorder prediction 106 151 - -
Lja1g3051 340 SMART WRKY_cls 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3051 Lja-Chr1 36914094 36915753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3051 1 339 WRKY Transcription Factor Family AT4G01250 44.602 2.88e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g3051 WRKY 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3051 K13425 - gmx:100798084 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3051 1 36914094 36915753 Lja5g0674 5 6073274 6074802 ECH
Lja1g3051 1 36914094 36915753 Lja1g3051 1 36914094 36915753 ECH
Lja3g1845 3 20906793 20908656 Lja1g3051 1 36914094 36915753 ECH
Lja4g0384 4 3088280 3090114 Lja1g3051 1 36914094 36915753 ECH
Lja1g3051 1 36914094 36915753 Lja3g1845 3 20906793 20908656 PCT