Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3048 ATGGGTGACCCAATGGAGAGCCAAAACCCACCACCACCACCATTATTACTATTACCACCACCCCAAAACAACACTTTTACTACTACGACTAATCCTTTTCTCTTCAATATGTCCCCTCAAGATCATAATCAAGGTTTTTCTGACATTGATTGGGGCAACCTTTTTTGTGGCCAAAGCAGTTCCTCCTTGTTGCTTGATGGGGATTATCATGCTAATAAGGAAACTACGGGGATCGACCCGTGCGGTTCTTCGTCCGATTTTTTGATGATGAATGAAAGTGGAGGTGCTCAAGATTATCATCATGAGGGTGAGAAGGGAGGGAAGGAGAAAAGGATCAAAGTTGGGAGGGTGAAGAAGACGACAAAGGTCCCGAGGTTTGCGTTTCAGACGAGAAGCGTTGATGATATTTTGGATGATGGGTATCGCTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAATAGCACGTATCCCAGAAGCTACTACCGTTGCACCCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATTGTGGTGACAACTTACGAGGGAATTCACAACCATCCATGCGAGAAGCTCATGGAAACCCTAACCCCTCTCCTCAAGCAAATACAGTTCCTTGCTAGCTTGTAA 651 0.4531 MGDPMESQNPPPPPLLLLPPPQNNTFTTTTNPFLFNMSPQDHNQGFSDIDWGNLFCGQSSSSLLLDGDYHANKETTGIDPCGSSSDFLMMNESGGAQDYHHEGEKGGKEKRIKVGRVKKTTKVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3048 216 Gene3D WRKY domain 122 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3048 216 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 43 212 - -
Lja1g3048 216 SUPERFAMILY WRKY DNA-binding domain 131 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3048 216 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3048 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 212 IPR044810 GO:0003700
Lja1g3048 216 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3048 216 SMART WRKY_cls 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3048 Lja-Chr1 36879686 36882167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3048 103 216 WRKY Transcription Factor Family AT5G41570 71.053 5.40e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g3048 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3048 - - gmx:100127398 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3048 1 36879686 36882167 Lja1g3048 1 36879686 36882167 ECH