Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3045 ATGTCCTCTCCTCACACATACTTTGCCAACCTCGGCCTCGGCTACTCCATAGCCATCGCCCTCGCCTTCCTCGTCCTCCTCTCCACTCTCATCCTCTCCTCCTACCTCTGCTGCCGTTCAAACCGCCACAATTTTAACAACCCCACCACCACCACTACCAACAACCACAACTTCTCCGACGGTGGCATCGTCCTGCCACGTGTGATCTTCGTGGCGGAGGACGACGATGACGAGGAGTCACAGCGCGGCGAGGAGGAGAACACCGCGGTGGGTCTGGACCAGAACGTGATAAACTCGTACCCGAGGTTTCAGTTCAGCAGGGACAGTGGTGCGGGAGGACAGAGCACCACGTGTTCGATTTGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCGACACTACTTCCACCTCTGCTGCCTCGATTCATGGCTCAAGCTTAAAGGGTCGTGCCCTGTTTGTCGGAACTCGCCGCTCCCGACGCCGGTTTCTACGCCGCTGTCAACGCCGCTTCAGGAGGTGGTGCCGCTCTCTCAGTATGCTGCTGATCGGAGGCGAAGGAGGTGA 582 0.5808 MSSPHTYFANLGLGYSIAIALAFLVLLSTLILSSYLCCRSNRHNFNNPTTTTTNNHNFSDGGIVLPRVIFVAEDDDDEESQRGEEENTAVGLDQNVINSYPRFQFSRDSGAGGQSTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLKGSCPVCRNSPLPTPVSTPLSTPLQEVVPLSQYAADRRRRR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3045 193 PANTHER RING-H2 FINGER PROTEIN ATL67 4 192 IPR044289 GO:0016567|GO:0016740
Lja1g3045 193 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lja1g3045 193 SUPERFAMILY RING/U-box 117 165 - -
Lja1g3045 193 Pfam Ring finger domain 117 160 IPR001841 -
Lja1g3045 193 PANTHER RING-H2 FINGER PROTEIN ATL67 4 192 - -
Lja1g3045 193 CDD RING-H2_PA-TM-RING 117 160 - -
Lja1g3045 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 164 IPR013083 -
Lja1g3045 193 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3045 Lja-Chr1 36835944 36837101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3045 9 183 C3H Transcription Factor Family AT5G07040 37.500 6.67e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3045 - - lja:Lj1g3v2807930.1 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3045 1 36835944 36837101 Lja1g3045 1 36835944 36837101 ECH
Lja1g3045 1 36835944 36837101 Lja3g1837 3 20873490 20874822 PCT