Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3044 ATGTCCTCCCCAAATTTGTCTTCTCCCGCCACGGCCGCCACAAACGACGACCAACCTCATGGCATGACAACCGTTGATGAGGTAGACGCATTCACAAGGTTGTTCCTCTTGTGCATCTTCCTCACCCTCTTCATTCGAGTATGTTATGTTTACTTTACCTCGTACCGTTTCCAAAACCTTGGTAACACATCAACAAGACATTTCAATGAGAAAAAAGCACCCACAGGGCTTCACATTGATGTTATTAACTCCTACCAAACGTTCCCTTATGCAAAAGATAATGTTGTGATGACAATCACAAATGATCATGACACTGTGTGTTCCATTTGCATTTCGGATTATGTGGAGTCGGAGATTTTGAGGATGATGCCGCAATGTCGCCACTATTTTCATCGAGATTGTGTTGATCAATGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTCGGAGCTCGCTAATATTGCAAGGTAGCAACAATGGTTCCTCAAACTTAGAATTCGTGTAA 504 0.4325 MSSPNLSSPATAATNDDQPHGMTTVDEVDAFTRLFLLCIFLTLFIRVCYVYFTSYRFQNLGNTSTRHFNEKKAPTGLHIDVINSYQTFPYAKDNVVMTITNDHDTVCSICISDYVESEILRMMPQCRHYFHRDCVDQWLKVNGSCPICRSSLILQGSNNGSSNLEFV* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3044 167 SUPERFAMILY RING/U-box 98 155 - -
Lja1g3044 167 SMART ring_2 107 148 IPR001841 -
Lja1g3044 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 153 IPR013083 -
Lja1g3044 167 CDD RING-H2_PA-TM-RING 106 149 - -
Lja1g3044 167 Pfam Ring finger domain 106 149 IPR001841 -
Lja1g3044 167 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lja1g3044 167 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 15 167 - -
Lja1g3044 167 PANTHER RING-H2 FINGER PROTEIN ATL67 15 167 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3044 Lja-Chr1 36821918 36822421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3044 53 151 C3H Transcription Factor Family AT2G46495 38.835 2.96e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3044 - - ccaj:109814695 173.711