Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3041 ATGAATAGAGAGATAAACACCCAAAATTTTAACATGAGAAAATCTTCATCCGAAAAACAATTGAAGTGCAACTCATTTATTGTCTTCTTTGTAGACTTGTTCATGGAGCTTCACTACCACCTCCAGATTCTCTCCACAACCCTGCTACTGTTTATGTTTCCTCAGCCACTCAACTCCCAACAACTATACCTCAATAGTTCTGTCTATGACTGCACTGATAACCCTTCTGCACCAAAAGGGTACCTATGCAATGGCCTTAAAAAATCATGCACTTCCTTCTTGGTTTTCACTTCAAAACCTCCCTATGACAACCCTCTAAGCATAGCTTACCTTCTTGGCTCTGAAGCATCCACCATAGCCTCAATCAACAATATCTCAATGAATGGCAAAATCCCTACCAACAAATCAGTCATTGTTCCTGTTTTCTGCTCATGTTCTGGGAACATCTACCAGCACAGCACACCTTACACTGTGGTCAAGAATGACACCTACTACATGCTTGTGAAAACGACTTACCAAGGCCTCACCACATGCCAGGCCATGATGGGTCAGAATTACTATGCTGCAGTGAGCATTGCAGTTGGTGCAGAGCTCACAGTTCCAGTGCTGTGTGCTTGTCCCACTTCAAACCTCATAGCAAAAGGGGTGAGCTTCTTGCTGGTTCACATGGTGAGGGATGGTGAAATGGTTAACTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGAGAGAGGCTAATGGGTTGCCAGTGGTGCCATCAAGTGCAAACAATAGTGTGACCCTCAATGCCTTGACACCTATATTAGTACCTCTGAGAGGCCAGAGTTGCAAGGAGAATCCAGATAAATTCTATTGTAAATGTTCCCAGGCACTGCATGATGGAAGCTCCAAGGGGCTCTTCTGTAATGAATCAGATGGTCAAAAATTCCCTGCCAAGTTGGTTGTTCCATTAGGTGTTGGAATTGGTGCAGGCTTTCTGTGTTTGTTTGTTTCAGGCTACAAGTTATATCAATACATACAGAAAAAGAGAAAGAGGATTCATACGGAAAAGCTCTTCAGGCAAAACGGTGGTTACTTGTTACAAGAGAAGTTTTCATTATATGGAAATGGAGAAAAGGCAAAGCTTTTCACAGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCGTAGCAGGTTTCTTGGTCAAGGTGGTTATGGCATGGTGTACAAAGGAATGCTACCAGATGGAACCATAGTTGCAGTTAAAAGGTCAAAAGAGATTGAAAGGAGCCAGATAGATACTTTTGTCAATGAAGTGGTCATTTTATCTCAGATTAACCACAGGAACATTGTCAAACTCTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTAGTCTATGAATTCATTCCCAATGGAACTCTTTCCCAACATATCCATATGAAAAATTATGAGTCATCATCATCACTTCCATGGGAGAGTCGCCTTCGAATTGCATGTGAGGTTGCTGGAGCATTAGCATATATGCATTTTTCAGCTTCGATTCCCATCTTCCACAGAGATATCAAACCCACCAACATACTCTTGGATTCTAACTTCTGTGCCAAAGTTTCTGATTTTGGGACATCAAAATCAGTCCCACAAGACAAGACTCACTTAACCACAAATGTGAAAGGAACCTTTGGGTACATAGACCCTGAATATTTCCAATCATGTCAATTTACTGATAAAAGTGATGTGTATAGTTTTGGGGTTGTTCTTGTAGAGCTCATAACTGGGAAAAGGCCCATTTCATTCTTTTATGAAGATGAGGGTCAGAATCTGGTTGGAGAGTTCATTTCTCTGATGAAGGAGGACCAGCTTTCTCAGATTTTAGATGCCGTAGTGGTGAAGGAAGCAAGAATAGATGACATTCTTTCCATTGCAAGTCTTGCAAGGAGATGCTTGAGACTGAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAACTAGAAGCATTGAGAAAGGTACAAAATACCTTACAAATCAACCATGATCATGAGTCACCAGGTGATGGTCAATCAACTAAGTACACAAACAGTGACATAGAATCCAGAGAGGAAAGCTTCTCGCTATCCTTACAACTAGAATCCACATCCTTCTAA 2139 0.4142 MNREINTQNFNMRKSSSEKQLKCNSFIVFFVDLFMELHYHLQILSTTLLLFMFPQPLNSQQLYLNSSVYDCTDNPSAPKGYLCNGLKKSCTSFLVFTSKPPYDNPLSIAYLLGSEASTIASINNISMNGKIPTNKSVIVPVFCSCSGNIYQHSTPYTVVKNDTYYMLVKTTYQGLTTCQAMMGQNYYAAVSIAVGAELTVPVLCACPTSNLIAKGVSFLLVHMVRDGEMVNSIGEAYGVDEQSMREANGLPVVPSSANNSVTLNALTPILVPLRGQSCKENPDKFYCKCSQALHDGSSKGLFCNESDGQKFPAKLVVPLGVGIGAGFLCLFVSGYKLYQYIQKKRKRIHTEKLFRQNGGYLLQEKFSLYGNGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKRSKEIERSQIDTFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHMKNYESSSSLPWESRLRIACEVAGALAYMHFSASIPIFHRDIKPTNILLDSNFCAKVSDFGTSKSVPQDKTHLTTNVKGTFGYIDPEYFQSCQFTDKSDVYSFGVVLVELITGKRPISFFYEDEGQNLVGEFISLMKEDQLSQILDAVVVKEARIDDILSIASLARRCLRLNGKKRPTMKEVSAELEALRKVQNTLQINHDHESPGDGQSTKYTNSDIESREESFSLSLQLESTSF* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3041 712 Gene3D Phosphorylase Kinase; domain 1 364 465 - -
Lja1g3041 712 CDD STKc_IRAK 396 665 - -
Lja1g3041 712 Coils Coil 655 675 - -
Lja1g3041 712 SMART serkin_6 390 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3041 712 Pfam Protein kinase domain 390 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3041 712 PANTHER LYSM TYPE RECEPTOR KINASE 59 703 - -
Lja1g3041 712 Gene3D Transferase(Phosphotransferase) domain 1 466 687 - -
Lja1g3041 712 MobiDBLite consensus disorder prediction 674 712 - -
Lja1g3041 712 SUPERFAMILY Protein kinase-like (PK-like) 374 662 IPR011009 -
Lja1g3041 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Lja1g3041 712 ProSiteProfiles Protein kinase domain profile. 390 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3041 712 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 59 703 IPR045274 GO:0007166
Lja1g3041 712 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3041 Lja-Chr1 36801678 36805662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3041 320 666 Receptor kinase-like Gene Family AT1G16130 56.609 2.28e-135 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g3041 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3041 - - gmx:100795455 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3041 1 36801678 36805662 Lja1g3041 1 36801678 36805662 ECH