Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3028 ATGGTTTCGCTTTCCACCAATCCCTTCTTACCCCTCACAGCAAAAAACGCTTTCTCTTCTCTTGCTTCCACTAGATTTCCACCTGCAAACAGGGTGAACCCGCTCAAGCCCAGTAAGGATCACAAGAAGGTTGTCTGTGCCTGCATCGCCCCACCAAGAAACTTCAACAGCCAAGACTCTTCCGCCATTGAATTCAATGGTTCATCGAAGTCAGAACAGCTAAGCACGTTGCGGGATCATGAGGATGATTCTGATGTTCTTATTGAATGCAGAGATATCTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTTAGCTTCAAGATCAGACGTGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACGGGGAAATCTACAGTGTTGAAGATTATTGCTGGACTTCTTGCTCCAGACAAAGGGGAAGTTTACATCTGTGGTAGAAAGAGAGTTGGTTTGGTAAGCGACGATGACATTTCTGGTCTTCGGATCGGATTGGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAGCACTCAAGCATGTCTGCGAAAGCGATATCAGACGAGGTCAAGAAAAGCTTGGCTGCAGTTGGATTGGAGGCGGGAGTTGAGGAGAGGTTGCCTTCAGAGCTATCAGGTGGGATGAAAAAGCGTGTTGCTTTAGCTCGATCTATTATTCATGACCCCAAGAAGAGTTCAGAAGAGCCAGAGGTGCTATTGTATGACGAACCGACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATTTGATTCGGTCTGTGCACAACAAAGGGCACGTTGATGATAAAAATTCTCAAAATATTGCATCTTATGTGGTCGTTACTCACCAACATAGTACCATTAAAAGAGCCGTTGATAGGTTATTGTTTCTGCACGAGGGAAAGCTTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACAGAAAATAAAATTGTTCAGCAGTTTGCATCTGGGAACCGGGTTGGTCCTATCAAATATTAG 1053 0.4378 MVSLSTNPFLPLTAKNAFSSLASTRFPPANRVNPLKPSKDHKKVVCACIAPPRNFNSQDSSAIEFNGSSKSEQLSTLRDHEDDSDVLIECRDIYKSFGEKKILNGVSFKIRRGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYICGRKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSAKAISDEVKKSLAAVGLEAGVEERLPSELSGGMKKRVALARSIIHDPKKSSEEPEVLLYDEPTAGLDPIASTVVEDLIRSVHNKGHVDDKNSQNIASYVVVTHQHSTIKRAVDRLLFLHEGKLVWEGMTHEFTTSTENKIVQQFASGNRVGPIKY* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3028 350 Pfam ABC transporter 103 259 IPR003439 GO:0005524
Lja1g3028 350 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524
Lja1g3028 350 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 33 350 - -
Lja1g3028 350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 88 340 IPR003439 GO:0005524
Lja1g3028 350 SMART AAA_5 112 317 IPR003593 -
Lja1g3028 350 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 33 350 - -
Lja1g3028 350 Gene3D - 74 344 IPR027417 -
Lja1g3028 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3028 Lja-Chr1 36660335 36667556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3028 87 335 Calmodulin-binding Proteins AT2G36910 28.736 3.69e-16 78.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3028 1 36660335 36667556 Lja1g3028 1 36660335 36667556 ECH