Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3023 ATGGAATTCCATGCTGCAATTTCCATGTCTCAAGATGCAATGTGGCAAATGAGCTTGAGGTCAAGTGAAACAATGGATTCAGGTCCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCACCCTCCGAACAGGAGACTGGCTATTGCCGCTGCACGGATGAAAGGCGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACTTGCAGATTTCATCATCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCTCTCCGCCCAAATGAGCCTGAATGCGCATATTATTTTAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGTAATATGGTGCTTTCAATGCAGAGTTCTGCTGTTTATCCTACCGTCCAATCTCCAACAACGCCAGGTCAGCAGTCGTATGCAGCAGGGATTACAAATTGGTCTAGTTCATCCTATATCCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTGCGTACAATGGTCAAATGGGACCAGACAGTCCACAGCAAACAATGGGAAATGATCAAGCCTATGGAACTTCTCGCCAAGGTGATCCAGAAAATACAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCTCTGTACCTGTAGGATTCTACGCGTTGGAGGGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTCTACATGAAAACCGGAGATTGTAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGGCGATTCCTGCTCCTGACTGCATTTTGAGTCCACTTGGCCTTCCTCTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCACGTTACGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCGCCTACAACATATCTGCACCACCTTCGGCTGACGCCTCAGGACGGCGTCTTTTGGGTTCGTCATCATCGGGAACCGCTGCGTTAAATTTATCATCAGAAGAGCCAAGGAGGGTTTCAATATCCGAGACAAGACATGTTCCTTCTGGTGATGATGAGGGATAA 1233 0.468 MEFHAAISMSQDAMWQMSLRSSETMDSGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRRLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNEPECAYYFRTGQCKFGNTCKFHHPQPSNMVLSMQSSAVYPTVQSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYNGQMGPDSPQQTMGNDQAYGTSRQGDPENTGSQGAYSQFRSGSVPVGFYALEGENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNISAPPSADASGRRLLGSSSSGTAALNLSSEEPRRVSISETRHVPSGDDEG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3023 410 MobiDBLite consensus disorder prediction 394 410 - -
Lja1g3023 410 ProSiteProfiles Zinc finger C3H1-type profile. 34 61 IPR000571 GO:0046872
Lja1g3023 410 ProSiteProfiles Zinc finger C3H1-type profile. 78 106 IPR000571 GO:0046872
Lja1g3023 410 Gene3D - 1 70 - -
Lja1g3023 410 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Lja1g3023 410 SUPERFAMILY CCCH zinc finger 330 354 IPR036855 GO:0046872
Lja1g3023 410 MobiDBLite consensus disorder prediction 224 256 - -
Lja1g3023 410 SMART c3hfinal6 78 105 IPR000571 GO:0046872
Lja1g3023 410 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lja1g3023 410 SMART c3hfinal6 281 308 IPR000571 GO:0046872
Lja1g3023 410 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Lja1g3023 410 SMART c3hfinal6 327 354 IPR000571 GO:0046872
Lja1g3023 410 MobiDBLite consensus disorder prediction 221 256 - -
Lja1g3023 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 60 IPR000571 GO:0046872
Lja1g3023 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 329 354 IPR000571 GO:0046872
Lja1g3023 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 105 IPR000571 GO:0046872
Lja1g3023 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 308 IPR000571 GO:0046872
Lja1g3023 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Lja1g3023 410 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Lja1g3023 410 SUPERFAMILY CCCH zinc finger 127 152 IPR036855 GO:0046872
Lja1g3023 410 MobiDBLite consensus disorder prediction 372 393 - -
Lja1g3023 410 PANTHER PROTEIN PHOSPHATASE RELATED 7 409 - -
Lja1g3023 410 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 7 409 - -
Lja1g3023 410 ProSiteProfiles Zinc finger C3H1-type profile. 327 355 IPR000571 GO:0046872
Lja1g3023 410 SUPERFAMILY CCCH zinc finger 285 309 IPR036855 GO:0046872
Lja1g3023 410 MobiDBLite consensus disorder prediction 370 410 - -
Lja1g3023 410 SUPERFAMILY CCCH zinc finger 38 61 IPR036855 GO:0046872
Lja1g3023 410 Gene3D - 279 357 - -
Lja1g3023 410 Gene3D - 77 164 - -
Lja1g3023 410 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3023 Lja-Chr1 36603259 36610696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3023 14 403 C2H2 Transcription Factor Family AT3G02830 62.437 4.76e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g3023 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3023 - - gmx:100786261 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3023 1 36603259 36610696 Lja1g3023 1 36603259 36610696 ECH