Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3018 ATGGGGATTCTTGTTGAGGTTGATAGCGGTGATGAAAGCGACGACGACGTTCTGGTTCCGCCGACGAACTTCTCCATGGTGGAGGATTGCATTTTCCGATCAAGTTTCCCCAACCCTTCAAATTTCCCCTTTCTCCGAACCCTAAACCTTCGCTCTGTCATATACTTGTGTCCTGAACCTTACCCGCAAGAGAATCTGGAGTTTCTTCGGTCGGAGAATATTCAGCTTTTTCAATTTGGAATCGAGGGGAAGACGGATGTTTCTTTACCAATTCTCAGTGATTCTATCATGGAGGCTCTGAAAGTTTTAGTTGATGTGAGAAATCATCCAGTTTTGATCCATTGCAAACGTGGAAAGCATAGGACAGGTTGCCTAGTTGGTTGCTTTCGGAAATTCCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCCGGTGTTAAATCCAGAATAATGGATTTAAGCTTCATAGAAAAGTTTGACATCAAAATCCTGAGCCAGTGCCTTTACAGCATCATCTACCAGTACCATGGATATGGTTCGAAGAAGCGCCGGTTGTCGTATACAGAGGACAATTTACAGAAGCCCCGATTGACATCATTTTAA 615 0.4374 MGILVEVDSGDESDDDVLVPPTNFSMVEDCIFRSSFPNPSNFPFLRTLNLRSVIYLCPEPYPQENLEFLRSENIQLFQFGIEGKTDVSLPILSDSIMEALKVLVDVRNHPVLIHCKRGKHRTGCLVGCFRKFQNWCLSSVFEEYQRFAGVKSRIMDLSFIEKFDIKILSQCLYSIIYQYHGYGSKKRRLSYTEDNLQKPRLTSF* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3018 204 Gene3D Protein tyrosine phosphatase superfamily 17 167 IPR029021 -
Lja1g3018 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 187 - -
Lja1g3018 204 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 161 IPR029021 -
Lja1g3018 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 13 187 - -
Lja1g3018 204 Pfam Tyrosine phosphatase family 18 170 IPR004861 -
Lja1g3018 204 PRINTS Plant and fungal dual specificity phosphatase signature 74 88 IPR020428 GO:0016791
Lja1g3018 204 PRINTS Plant and fungal dual specificity phosphatase signature 91 105 IPR020428 GO:0016791
Lja1g3018 204 PRINTS Plant and fungal dual specificity phosphatase signature 55 68 IPR020428 GO:0016791
Lja1g3018 204 PRINTS Plant and fungal dual specificity phosphatase signature 18 35 IPR020428 GO:0016791
Lja1g3018 204 ProSitePatterns Tyrosine specific protein phosphatases active site. 113 123 IPR016130 GO:0016311|GO:0016791
Lja1g3018 204 CDD PFA-DSP_Siw14 18 164 - -
Lja1g3018 204 ProSiteProfiles Dual specificity protein phosphatase domain profile. 23 174 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3018 Lja-Chr1 36561817 36564202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3018 11 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.474 4.02e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3018 K18045 - gmx:100785746 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3018 1 36561817 36564202 Lja1g3018 1 36561817 36564202 ECH