Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3010 ATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTACCGCGCCTCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTACTGCTAAGAGCATTGAATCTTCAGACCTTGATTTCTCAAGATATGGTGACACATTTTTTGAGGTTGTTTTCATTGGGTGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAACGCCATCCTTACTCTGTAATAGAGTGTGAGCCGAAGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAGATTTTGCGGAGGAGGCCATTCCTCATCAAGAACCTTGAAAATGTTATGCGAAGATTCCTCCAGTCCTTGGAACTTTTTGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACTGCACTTGCATTCTCCCAGAAGCTATCTGGTCTCCCACCGGAGACAGTGTTCCAACCGCTTCTTAAAGACAACCTTGTGGGCAAAGGAATAGTTCTGACATTTATTACTGACTTCTTTAAGGAGTATCTGATCGACAACAGCCTTGATGATCTTATTTCAATTCTGAAACGGGGAAAAGTAGAGGATAATCTCTTGGAGTTTTTCCCTCCTGCAAAAAAATCAAATGAGTCTTTCTCTGAGCATTTCAGGAACGAAGGACTGGTGACCTTGGTGGAGTACAATGAAAAGAAAATATTTGAGGTGACTCTGAAGGAAATGAAGTCTGCTTTGACAACACAGATAACAGAGGAGGCTGATATATCTGATGTCATTGAGACTGTAAAGCTCCGAGTTAAAGATGCTAAATTGCCTGACACCGAGGTTGTGCGGGTCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGAAAAAATCAGCAACAGAATGCAAATTCAGCCTTGCGCCAGGTAAAAACTTGGGCAGAACTGTTGAATACATTCTGCACCACTGGGAAGCTTGAGCTGGAACTGTTGTACAAAGTACAGACTCAATGCTATGAGGATGCCAAACTGATGAAGCTGTTCCCTGAGATTGTTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACTATTCTGCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAGGCAGAACTTTTTGAAGGCACTGGAACCGTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAATAA 1236 0.4409 MSSKERPTLGGTRIKTRKRNITAPLDPAAFSDAVVQIYLDNAGDLELTAKSIESSDLDFSRYGDTFFEVVFIGCRTQPGTTKPDEGERHPYSVIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGIVLTFITDFFKEYLIDNSLDDLISILKRGKVEDNLLEFFPPAKKSNESFSEHFRNEGLVTLVEYNEKKIFEVTLKEMKSALTTQITEEADISDVIETVKLRVKDAKLPDTEVVRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELLYKVQTQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNSKGRQNFLKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3010 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Lja1g3010 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Lja1g3010 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Lja1g3010 411 Gene3D - 242 411 - -
Lja1g3010 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Lja1g3010 411 SMART 542_3 325 410 IPR003307 GO:0005515
Lja1g3010 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Lja1g3010 411 Coils Coil 121 141 - -
Lja1g3010 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3010 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 33.636 1.14e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3010 - - rcu:8274281 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3010 1 36486066 36491630 Lja1g3010 1 36486066 36491630 ECH