Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3009 ATGGCATCAGATGGCCAAACACCGCCTCTCGAGATATTAGTTCGAGGGCCGGAAGAATTCTCAATCTGGACTGGACCCCCGTTTGCCAATGGTCAACCTGGTATCAAGCTTGAAAAGGTTAATTGTACGAGTGCGAAATATAGTGATGATGGATCTCGGCTTATGGTGATGAAATCCAACTCTGTGATTAGTGTGTATGATTGTAGAACTGCTAAAGAGGTAAAGTCTTTTGAAGTACCTAATGTTATGGCTGCTATCCTGTCACCACGCGGGACTTATTTGCAAATCTTCAAAAAACCTTCGGGGCCCCAAGATAAGAATGTGGCACTCTGGAAGACGGAGACTGGTGACCCTGTTTATCAACACTCCCAAAAGAACTTGACAAAAAACAATTGGCCTGTGATTCAATTCAGCTCTGATGAAGCTACTGCGTGCCGGTTGGCAACTAATGAGGTGCAATTTTTTGATGCCACGGACTTCTCTAAAGGAGTTATCCAACGGTTAAGAGTTCCAGGAGTTGCTGCCATTGAGCTCTCTAGTTCACCCGGGTCTCATATAGCTGCATTTGTTCCAGAATCCAAGGGAATTCCTGCTAGTGTGCAGATATTTGCTTGTGGAGATGCTTCTCAAAGCCAACCTATTGCTCGGAGGAGTTTTTTCCGATGTTCCAACGCCCAACTCAAATGGAATCATGGTTCAACTGGGCTTCTAGTGGTGGCGCAGTCGGACGTTGACAAAACTAATCAGAGTTATTATGGAGAATCAAAGTTATACTACCTGACAACAGATGGGAAGCATGAAGGACTTGTTCCTCTTCGAAAAGAAGGGCCTATTCATGATGCTCACTGGTCATATTCTGGCTTGGAATTTGCCGTTGTATATGGCTTTATGCCTGCTAAAGCAACTCTGTTTGACAAGAACTGCAATCCTCTACTGGAGCTTGGAACTGGTCCTTACAATACTATTCGATGGAATCCAAAGGGAAGATTTTTATGTTTGGCTGGCTTTGGTAACTTACCTGGTGACATGGTGTTCTGGGATTACGCGGATAAGAAACAGCTCGCAGCAACTAAGGCTGAATGGTCTGTTACAAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCGACAACAGCTCCGAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGATCATTGTACTTCAAGAAGATGTTTGACAAGTTGTTCCAGGCTGATTGGAAACCAGAGTCGCCAAGTAAGTTTGGTGACATCGCTGAATTAATCAAGTCTATAGACTCGGTAAAACTTGAAGATAAAAAACCATCAGGTCAAGGACCAAAACCTACCCAGGCTGCTACAAAAGCCTCATCTGCCAACCCCCCTGCGCAAAAACCCGCTGCCTATCGCCCACCACATGCTAAGACTGCAGCTGTTATACAGGCACAGCTACTTGGAGAGAGCCCTTCAGAAACATTGAGCAAGAATGCTTTACGAAACAAGAAAAAAAGGGAGAAGAAAAAGGCGGCTACAGATGCCAGTTCTTCATGA 1545 0.4479 MASDGQTPPLEILVRGPEEFSIWTGPPFANGQPGIKLEKVNCTSAKYSDDGSRLMVMKSNSVISVYDCRTAKEVKSFEVPNVMAAILSPRGTYLQIFKKPSGPQDKNVALWKTETGDPVYQHSQKNLTKNNWPVIQFSSDEATACRLATNEVQFFDATDFSKGVIQRLRVPGVAAIELSSSPGSHIAAFVPESKGIPASVQIFACGDASQSQPIARRSFFRCSNAQLKWNHGSTGLLVVAQSDVDKTNQSYYGESKLYYLTTDGKHEGLVPLRKEGPIHDAHWSYSGLEFAVVYGFMPAKATLFDKNCNPLLELGTGPYNTIRWNPKGRFLCLAGFGNLPGDMVFWDYADKKQLAATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPESPSKFGDIAELIKSIDSVKLEDKKPSGQGPKPTQAATKASSANPPAQKPAAYRPPHAKTAAVIQAQLLGESPSETLSKNALRNKKKREKKKAATDASSS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3009 514 MobiDBLite consensus disorder prediction 434 514 - -
Lja1g3009 514 SUPERFAMILY DPP6 N-terminal domain-like 41 395 - -
Lja1g3009 514 Pfam Eukaryotic translation initiation factor eIF2A 217 410 IPR013979 -
Lja1g3009 514 Gene3D - 39 419 IPR015943 GO:0005515
Lja1g3009 514 PIRSF Transl_init_eIF2A 5 514 IPR011387 GO:0003743|GO:0006413
Lja1g3009 514 MobiDBLite consensus disorder prediction 445 459 - -
Lja1g3009 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 9 511 IPR011387 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3009 Lja-Chr1 36477527 36483042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3009 131 418 Eukaryotic Initiation Factors Gene Family AT5G27640 25.581 5.68e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3009 K15026 - gmx:100811589 884.789