Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3007 ATGGGGTCCTGCTTCTCTGCGGAAAGCAGGAGCCCTCATCCCAATTCACCTGGGAAGCGGAAGAACTCAAAGAAGAGGCTTGGATCAAGGACCTCTTCCTTTGAGTATTGGAGGAATGAGCCACTTCATAGGATTGCTGACAGGATTTTCCTCAATGGCTCAAGCCAAGTTGCCTCCTTGTTCACCCAACAGGGAAAGAAGGGCACCAACCAAGATGCCATGATTGTTTGGGAGAACTTTTGTTCTAGACAAGATACAATTTTCTGTGGAGTTTTTGACGGACATGGTCCATATGGTCACATGGTTGCGAAAAAAGTGAGGGATTCTCTTCCTATGAAACTGAATGCCCATTGGGAATTTAATGCATCTGGTGAGGAATCCCTCAAGGAGCTTACCATTAATACTGTATTAAGCATGAACTCAGAAGAAACTCCCTCTTTATCTGCTGATGAGGAATCCAGGGTATCCGTTGATGCTGCTGAGGAGACAGAAAAGCACCCGGAAATCTTTCACACACTTAAAGAGTCATTTTTGAAGTCATTCAAAGTTATGGATAGAGAACTGAAGATGCACCAAACTATTGATTGCTTCTGTAGTGGCACAACAGCTGTCACTCTGGTTAAGCAGGGTCATGACCTTATAATTGGAAATGTTGGCGACTCTAGAGCGGTGCTGGCTACAAGAGATAGAGATGATTCTCTTGTTGCAGTACAGTTAACTGTCGATCTAAAACCCAATCTCCCTGCTGAAGCAGAGAGAATTCGCAAATGTAAAGGCCGAGTTTTTGCTCTTCACGATGAACCTGAAGTTGCTAGAGTCTGGTTGCCAAACAATGATTCCCCCGGCCTTGCTATGGCAAGGGCATTTGGAGATTTTTGTCTGAAAGATTTTGGTCTAATCTCTGTCCCTGAGGTATCATACAGACGCCTCACTGATAAGGATGAGTTTATTGTCTTAGCAACAGATGGGATTTGGGATGTGCTTTCAAACAAAGAAGTGGTAGACATTGTGGCATCCGCGCCGAGGCGTTCCACCGCAGCGCGAGCACTGGTTGAGTCAGCAGTTAGAGCTTGGAGGTACAAGTATCCAACCTCCAAAGTAGATGATTGTGCTGTGGTTTGCCTATTTCTTGACTCAGACATGAACAAAGTATACAGTGCTTCTTCCCATGCCAAGTCCAATGAGCCGGCTAGTTCTGGGATCACCCAAGTCAGTAGCAATGGTGGTGATGATGACGATGATGTTTCCGGACCTCCTGGTCTAGCAAGGTCAGGAACCTGTAGGGAAGTCAATGGCAATGGTACTACTTCACATGACGATAACAACAACAATGAGGAAGAGTTGAAGGACGAGGAGGAGATAGATGCTGATGCAGAAAAAGAGTGGTCTGCACTTGAAGGAGTATCTCGTGTGAACACTTTGTTAACTCTCCCAAGATTTGTCCCTGACAAAGCAGACAAGGCTGCAGCATCAGAAGGGGTGAGAAAACGCAAATGA 1497 0.4562 MGSCFSAESRSPHPNSPGKRKNSKKRLGSRTSSFEYWRNEPLHRIADRIFLNGSSQVASLFTQQGKKGTNQDAMIVWENFCSRQDTIFCGVFDGHGPYGHMVAKKVRDSLPMKLNAHWEFNASGEESLKELTINTVLSMNSEETPSLSADEESRVSVDAAEETEKHPEIFHTLKESFLKSFKVMDRELKMHQTIDCFCSGTTAVTLVKQGHDLIIGNVGDSRAVLATRDRDDSLVAVQLTVDLKPNLPAEAERIRKCKGRVFALHDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEVSYRRLTDKDEFIVLATDGIWDVLSNKEVVDIVASAPRRSTAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSDMNKVYSASSHAKSNEPASSGITQVSSNGGDDDDDVSGPPGLARSGTCREVNGNGTTSHDDNNNNEEELKDEEEIDADAEKEWSALEGVSRVNTLLTLPRFVPDKADKAAASEGVRKRK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3007 498 Coils Coil 441 461 - -
Lja1g3007 498 SUPERFAMILY PP2C-like 51 378 IPR036457 -
Lja1g3007 498 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g3007 498 MobiDBLite consensus disorder prediction 389 457 - -
Lja1g3007 498 Pfam Protein phosphatase 2C 69 356 IPR001932 -
Lja1g3007 498 MobiDBLite consensus disorder prediction 389 410 - -
Lja1g3007 498 ProSiteProfiles PPM-type phosphatase domain profile. 57 377 IPR001932 -
Lja1g3007 498 CDD PP2Cc 56 377 IPR001932 -
Lja1g3007 498 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 476 - -
Lja1g3007 498 SMART PP2C_4 48 375 IPR001932 -
Lja1g3007 498 PANTHER ALPHABET, ISOFORM E-RELATED 1 476 - -
Lja1g3007 498 Gene3D - 52 379 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3007 Lja-Chr1 36454776 36459376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3007 1 484 PP2C-type Phosphatase Gene Family AT3G02750 61.381 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3007 - - gmx:100790373 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3007 1 36454776 36459376 Lja1g3007 1 36454776 36459376 ECH