Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3006 ATGGAATTAAGGGGCATGGCCAATTATCACAAGTTACTAGCAACATCATCACTCTGCATCATGATTTTGTTTGATCATTTGATTTTCTTTGTTGAAGCTGCCCCTGCAGGCTCTCTCGTCACAAAACTCCCTGGTTTTAAAGGCAATTTCCCATCCAAGCACTACTCCGGATATGTGAATATTGATGGAAATGGTGAGAATGGGAAGAACTTGTTCTACTACTTTGTGAGTTCAGAGAGAAATCCAGGGAAGGACCCGGTAGTTCTGTGGCTGAATGGTGGACCTGGCTGCTCCAGCTTAGATGGCTTTGTTTATGAACATGGACCATTCAACTTCCAGGCAGCAAAAACAAAAGGGGATCTGCCCATTTTGCATATCAATCCTTACAGCTGGTCCAAGGTGTCCAACATTATATACTTGGATTCACCCGCGGGTGTTGGCCTCTCATACTCAAAGAACTCAAGCAAATATGTTACTGATGACCTACAAACTGCTTCTGACACCCATGCTTTCCTCTTTAAGTGGTTTGAGCAATTTCCCGAATTTCTGGCCAATCCATTTTATTTGTCCGGGGAGTCTTATGCTGGAGTTTACGTGCCCACTCTAGCTATCGAAGTTGTTAAAGGAATCCAAAGTGGTAAAAAGCCCTTGATCAACTTTAAGGGTTACATGATTGGAAATGGGGTCACGGACTCAAAAATTGAGGACAATACTTTCATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAACATCTATGAGGCAGTTGAAGCTTCTTGCAAAGGGGATTACAATTCTCACTCAAAGAATGAGGATGATCTATGCTCTAAGAACATGGATAGAGTTTATAGGGCTCTTGATGGACTTAACGTGTACAATATATTAGAGCCTTGCTACCATTACCCAGATTCTGCAGCAGCAAAAGGAAATGGAAGCTTATTGCCACTAAGTTTCCAGCAATTAGGGGTTACAGAGAGGCCTCTCCCAGTGAGAAAGAGGATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCAGTCAAAGATGGTCTTCTAACACTGTGGCCTGAATTGGCTCAAACTCAAACCAGACATGTCCCATGTGTTGATGATGAAGTAGCAAGCTCATGGCTAAACAATGATGCAGTCAGAAAAGCCATTCATGCTGAGAGGGATAGTGTGGCTGGTCCATGGGAATTATGCACCTCAAGGATAAAGTATTATCACAATACTGGTGAGAGCATGATTCCTTACCACAAGAACCTAACTAAGTTGGGATACCGAGCACTTATCTACAGTGGTGACCATGATATGTGTGTACCATTTACCGGAAGTGAGGCTTGGACAAGATCTCTTGGATATAAGATTGTGGATGAATGGAGGCAATGGAGATCTAACAACCAAGTTGCTGGGTACTTACAAGCGTATGAGAACAACCTTATCTTCCTCACAGTAAAAGGAGCTGGTCATACAGTGCCAGAATATAAGCCTAGGGAGGCACTGGATTTTTACAGGCGTTGGTTGGAAGGAAGACCAATATAA 1539 0.434 MELRGMANYHKLLATSSLCIMILFDHLIFFVEAAPAGSLVTKLPGFKGNFPSKHYSGYVNIDGNGENGKNLFYYFVSSERNPGKDPVVLWLNGGPGCSSLDGFVYEHGPFNFQAAKTKGDLPILHINPYSWSKVSNIIYLDSPAGVGLSYSKNSSKYVTDDLQTASDTHAFLFKWFEQFPEFLANPFYLSGESYAGVYVPTLAIEVVKGIQSGKKPLINFKGYMIGNGVTDSKIEDNTFIPFVHGMGLISDNIYEAVEASCKGDYNSHSKNEDDLCSKNMDRVYRALDGLNVYNILEPCYHYPDSAAAKGNGSLLPLSFQQLGVTERPLPVRKRMFGRAWPFRAPVKDGLLTLWPELAQTQTRHVPCVDDEVASSWLNNDAVRKAIHAERDSVAGPWELCTSRIKYYHNTGESMIPYHKNLTKLGYRALIYSGDHDMCVPFTGSEAWTRSLGYKIVDEWRQWRSNNQVAGYLQAYENNLIFLTVKGAGHTVPEYKPREALDFYRRWLEGRPI* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3006 512 ProSitePatterns Serine carboxypeptidases, histidine active site. 479 496 IPR033124 GO:0004185
Lja1g3006 512 Gene3D - 364 512 - -
Lja1g3006 512 PANTHER CARBOXYPEPTIDASE 28 511 - -
Lja1g3006 512 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 511 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 ProSitePatterns Serine carboxypeptidases, serine active site. 189 196 IPR018202 GO:0004185
Lja1g3006 512 Pfam Serine carboxypeptidase 44 509 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 479 492 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Lja1g3006 512 SUPERFAMILY alpha/beta-Hydrolases 40 511 IPR029058 -
Lja1g3006 512 Gene3D alpha/beta hydrolase 33 321 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3006 Lja-Chr1 36447515 36453813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3006 372 512 Calmodulin-binding Proteins AT2G22960 48.936 5.82e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3006 K16296 - gmx:100790895 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3006 1 36447515 36453813 Lja1g3006 1 36447515 36453813 ECH
Lja1g3006 1 36447515 36453813 Lja3g1835 3 20856326 20858610 PCT