Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3002 ATGTGTGGGATTTTCGCGTATCTGAATTTCAAGGTAACCAGAGAGAGAAGATACATCTTGCAGGTTCTCTTCAACGGCCTTCGACGGTTAGAGTATCGCGGTTACGATTCCGCCGGAATCGCCATCGATTCTTCTTCTCCTCCGCCACCGCCACCGCCACAATGCTCCCTCGACGATTCCGACGATCTCACTCCCTCTCCTCCTCCGCTCGTCTTCCGTCGTGAGGGGAACATCGAGTCCCTCGTCAAATCCGTCTACCAAGAAGTTGATGAAACGGAATTGGACTTGGAGGAATGTTTCGGCACTCACGCCGGAATTGCGCACACTCGTTGGGCTACTCACGGTGAGCCTGCTCCTAGAAACAGTCATCCCCAAACTTCTGGTCCTGACAATGAGTTCTTGGTTGTTCATAATGGAGTTATCACTAACTATGAGGTTTTGAAGGCTACGCTGCTGCGACATGGCTTCACCTTTGAATCTGAAACGGATACAGAAGTCATCCCCAAGCTTGCAAAGTTTGTTTATGACAAAGCAAATGAAGCAGCAGGTGGTCAGGTTGTTACCTTCAGTCAAGTTGTTCTAGAAGTTATGAGGCATCTTGAAGGAGCCTATGCCCTTATTTTCAAAAGTTCACATTATCCTAATGAACTGATTGCTTGCAAGCGGGGTAGCCCACTTCTCCTAGGTGTTAAAGAATTGACAGAAACTAAGGAAAATGGTTCAGCCTTTGAGGACGACAAATTCCTATCAAAAGATGGACGACCCAAAGAACTGTTTTTGTCCAGTGATGCCAATGCTGTGGTTGAGCATACAAAGAAAGTTCTAGTTATTGAGGATAGTGAAGTTGTTCATCTCAAGGATGGTGGGGTTTCTATTTTGAAGTTTGATAATGACATAGGAGAGCTAGGAACTCCTCTTTCAAGAGCCTCTTCAGTGCGACGTGCATTATCCGTTTTAGAGATGGAGGTTGAGCAAATAAATAAAGGACATTATGAGCATTACATGCAGAAGGAAATTCATGAGCAACCTGAGTCTCTGACAACCACAATGAGGGGGAGGCTTATATGTCGTGGATCTAGCAAATCCAAGTCTGTTCTGCTCGGTGGATTGAAGGATCACCTTAAAACAATTAGGCGAAGTAGAAGGATAGTATTCATTGGTTGTGGTACAAGTTATAATGCTGCTTTGGCGGCTAGACCTATCCTGGAAGAACTTTCTGGTATTCCTGTTACTATGGAAATTGCTAGTGATCTGTTGGATCGGGAGGGCCCAATATATCGCGAAGATACAGCTGTTTTTGTTAGTCAATCCGGTGAAACTGCAGACACTTTACTTGCACTGCAATATGCTTTAGACAATGGCGCATTATGTGTTGGGATAACAAACACTGTTGGTAGCGCAATAGCAAGGAATACTCACTGTGGTGTTCATATAAATGCTGGAGCTGAGATTGGTGTGGCAAGTACCAAGGCATACACGAGCCAAATAGTAGTTATGGCCATGGTGGCTCTTGCAATAGGAGGTGATACAATTTCCAATCAAGGGAGAAGAGAAGCTATTATAGATGGTCTTTTTGACCTGCCAAATAAAGTCAGAGAGGTGCTGAAGCTTGATCAGGAGATGAAGGATCTTGCACAGCTATTGATTGCTGAGCAGTCACTTCTTGTCTTTGGGAGAGGATACAACTATGCAACTGCTCTGGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTTATGCACAGTGAAGGGATACTCGCAGGTGAAATGAAGCATGGCCCTCTGGCATTAGTGGATGAAAATCTTCCAATTGTTGTCATAGCTACCCGCGATGCTTGCTTCAGCAAACAGCAGTCAGTTATTCAACAACTCCGTGCCCGCAAAGGTCGCCTGCTAGTTATTTGTTCAGAAGGTGATGCTGCTTCTGTATGCCCCGGTGAATCTTGCAGGGTTATTGAAGTTCCACAAGTTGCGGACTGTCTTCAACCTGTAATTAACGTAGTTCCGTTGCAGTTATTGGCATATCATCTGACTGTGCTGAGGGGATTTAATGTGGACCAGCCTCGTAATCTAGCCAAGAGTGTTACCACTCAATAA 2094 0.4513 MCGIFAYLNFKVTRERRYILQVLFNGLRRLEYRGYDSAGIAIDSSSPPPPPPPQCSLDDSDDLTPSPPPLVFRREGNIESLVKSVYQEVDETELDLEECFGTHAGIAHTRWATHGEPAPRNSHPQTSGPDNEFLVVHNGVITNYEVLKATLLRHGFTFESETDTEVIPKLAKFVYDKANEAAGGQVVTFSQVVLEVMRHLEGAYALIFKSSHYPNELIACKRGSPLLLGVKELTETKENGSAFEDDKFLSKDGRPKELFLSSDANAVVEHTKKVLVIEDSEVVHLKDGGVSILKFDNDIGELGTPLSRASSVRRALSVLEMEVEQINKGHYEHYMQKEIHEQPESLTTTMRGRLICRGSSKSKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGIPVTMEIASDLLDREGPIYREDTAVFVSQSGETADTLLALQYALDNGALCVGITNTVGSAIARNTHCGVHINAGAEIGVASTKAYTSQIVVMAMVALAIGGDTISNQGRREAIIDGLFDLPNKVREVLKLDQEMKDLAQLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVIATRDACFSKQQSVIQQLRARKGRLLVICSEGDAASVCPGESCRVIEVPQVADCLQPVINVVPLQLLAYHLTVLRGFNVDQPRNLAKSVTTQ* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3002 697 CDD SIS_GlmS_GlmD_1 382 507 IPR035466 -
Lja1g3002 697 Gene3D - 533 682 - -
Lja1g3002 697 Gene3D - 329 696 - -
Lja1g3002 697 CDD GFAT 2 285 - -
Lja1g3002 697 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 301 IPR029055 -
Lja1g3002 697 ProSiteProfiles SIS domain profile. 544 687 IPR001347 GO:0097367|GO:1901135
Lja1g3002 697 PANTHER GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING 1 697 - -
Lja1g3002 697 ProSiteProfiles SIS domain profile. 373 512 IPR001347 GO:0097367|GO:1901135
Lja1g3002 697 MobiDBLite consensus disorder prediction 41 68 - -
Lja1g3002 697 CDD SIS_GlmS_GlmD_2 539 695 IPR035490 -
Lja1g3002 697 PANTHER GLUTAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE [ISOMERIZING] 2-LIKE 1 697 - -
Lja1g3002 697 Pfam Glutamine amidotransferase domain 100 218 - -
Lja1g3002 697 Pfam SIS domain 377 504 IPR001347 GO:0097367|GO:1901135
Lja1g3002 697 Pfam SIS domain 548 679 IPR001347 GO:0097367|GO:1901135
Lja1g3002 697 SUPERFAMILY SIS domain 328 696 IPR046348 GO:0097367|GO:1901135
Lja1g3002 697 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 288 IPR017932 -
Lja1g3002 697 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 294 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3002 Lja-Chr1 36406231 36412625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3002 92 229 PRT Gene Family AT2G16570 28.169 3.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3002 K00820 - gmx:100779312 1211.82