Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2993 ATGGAAGATAGGAGAGTGAATATAGTTGCTTCTATATCAGTGATCACACTGATATGTATCATAATTTTCGCTCGTGTCTTGTTGAAGCTCTCAAGGGCTTTCTTCCTCATTTGTGGCGCAGGAGTTTCTGTGATTCTTGCTGTTCTTGTTTGGCTACTCCTGCGCTTAAGCTACAACCGCAGAAGGAGGTTGTTGGAATCACAGTTAATTTTCGAAGGCCAAGAGCTTCGAACAGAGTATAGTTTCTTGCGGAAGGTTGCAGGGGTTCCCACAAAATTCAAATTCAAAGAGCTTGAAGAAGCCACAGATGGGTTTCAGTCACTTGTTGGAAAAGGCTCATCAGCTTCAGTTTTCAAAGGCGTTCTCAGTGATGGCACTTCAATTGCTGTGAAACGAATCAATGCACTAGGAAACAGAGGAGAGAAGGAGTTCAGATCAGAAGTTGCAGCCATCGCTAGCGTGCATCATGTGAATCTCGTGAGGCTTTTGGGCTATTGTAATGCTCCTTCAGCACCAAGGTACCTTGTTTATGAGTTCATCTCAAACGGGTCTTTGGATTGTTGGATCTTTCCAAAAAAGGAAAATCAAAGTCATGGTGGTAGGTGCTTGTCATGGAACTTGAGGTATAAAGTTGCAATTGATGTTGCTAAGGGACTGGCTTACCTTCACCATGATTGCAGATCAAGGATCTTACACCTTGATATAAAGCCAGAAAATATACTCTTGGATGAGACTTATAGAGGGATGGTTTCTGATTTTGGTCTCTCCAAGCTTATTGGTAAGGATGAAAACAAAGTGGTATCTACAATCAGAGGAACAAGAGGGTACTTGGCTCCTGAGTGGCTCTTGGAACAAGGTATATCAGATAAAACTGATGTCTATAGTTATGGGATGGTTCTCTTGGAAATTATTGGAGGCAGGAAAAATATGTGCTTAGTAAAAGATGAAAAGGACGTCGAGTCTAGAAGAAAATGGCAACACTTTCCAAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAGTTCATGGAAATTGTTGACCATAGGTTGATGGCATGCGAGGGTGTTGATGAGAGGGAGGTAAGAACATTGGTTTTTGTTGCTCTGTGGTGCGTGCAAGAAAGGCCAAGGTTGAGGCCTAACATGGTTCAAGTGGTTGATATGCTTGAAGGGCGCGTGAGGGTGGAGGAGCCACCAGATACCAGAATGATTCATCTGGATTTGCTCAACGTGGATGAAGAGAGTACAGCAAATTGTAACAACATGCCAAGGTTGTTGGACTCCATGTCGAGTCAAAGAACACATAGTATTGTGGATTGTACATCTACTTATAATTCGTTCATTATGTCCGGAAGATAG 1356 0.4248 MEDRRVNIVASISVITLICIIIFARVLLKLSRAFFLICGAGVSVILAVLVWLLLRLSYNRRRRLLESQLIFEGQELRTEYSFLRKVAGVPTKFKFKELEEATDGFQSLVGKGSSASVFKGVLSDGTSIAVKRINALGNRGEKEFRSEVAAIASVHHVNLVRLLGYCNAPSAPRYLVYEFISNGSLDCWIFPKKENQSHGGRCLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDETYRGMVSDFGLSKLIGKDENKVVSTIRGTRGYLAPEWLLEQGISDKTDVYSYGMVLLEIIGGRKNMCLVKDEKDVESRRKWQHFPKIVNEKVREGKFMEIVDHRLMACEGVDEREVRTLVFVALWCVQERPRLRPNMVQVVDMLEGRVRVEEPPDTRMIHLDLLNVDEESTANCNNMPRLLDSMSSQRTHSIVDCTSTYNSFIMSGR* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2993 451 Pfam Protein kinase domain 107 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2993 451 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Lja1g2993 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lja1g2993 451 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 451 - -
Lja1g2993 451 PANTHER RECEPTOR-LIKE KINASE 1 451 - -
Lja1g2993 451 Gene3D Phosphorylase Kinase; domain 1 71 179 - -
Lja1g2993 451 SMART serkin_6 103 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2993 451 SUPERFAMILY Protein kinase-like (PK-like) 86 389 IPR011009 -
Lja1g2993 451 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g2993 451 Gene3D Transferase(Phosphotransferase) domain 1 180 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2993 Lja-Chr1 36350816 36352353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2993 1 400 Receptor kinase-like Gene Family AT5G20050 62.779 1.06e-174 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja1g2993 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2993 - - gmx:100791152 651.358