Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2988 ATGGCTTCTATGAACTTGTTGGGTTTCTCTCTCTCCCCTCAAGAACATCCTTCTACCCAAGATCAAACGGTGGTGGCTTCTCGCTTTGGTTTCAACCCTCATGATCATGGAATCTCAGATGTTCAACGAGACTGCTTTGATCTCCCTTCTGACTCTTCAACTCACTCATTCAACCAGCTTCCTCCTTTTGCCTTATATCAAGAAGAACCATTTCACAGAAATACTAACATCAACACCACTCAAGATTGGAAGGAGAACTACAACAATCCAAGCTTGCTATTGGGAACTTCATGCAATAACCAAAATGTGAACAACAACCACCACAACCAGCAGCAACAGCCAAAGCTTGAAAATTTCTTAGGAAGACACTCTTTTGGTGATCATGACCAAACTTATGGTGGCAACTCAGCCTCCGCTGATTACATGTTTCCAAACTGCTCCTTACAGCTTCCGGCTGAATCTCAAACTCAGCCGGAAGCTGCTGGTGCAATTGGCGGTGGGACATCAGACTCACACTTGCATTCCAATGGCGCTAGCAACTCCATCGGCTTGTCCATGATAAAGTCATGGCTGAGGAACCAACCGCTACAATCAGACAACAACATCAACACCGACAGCAACAATAATGAAAATGGTGGCAGTGGTGCCACACGTGTGCAAAGTCTATCCCTTTCTATGAGTACTGGCTCACAGTCAAGTTCATCACTTCCTCTTCTAACGGCGAATGTGAGTGGAGAGAGTTCCTCATCGGAGAACAAACAACCACCGGCAACCACGGTGGCGGTGCTGGATAGCACCCAAACCGTGCCAGCTGCTGAAACTGTGCAGAGAAAGTCCATTGATACCTTTGGACAAAGGACTTCCATCTACCGTGGTGTAACAAGGCATAGGTGGACGGGGAGATATGAAGCTCATCTATGGGATAATAGTTGTAGAAGAGAGGGTCAGACTCGCAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCAAGATCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACCACTACTACAAATTTCCCAATTAGCCATTATGAAAAAGAGTTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTCGCTTCATTGAGAAGGAAGAGTAGTGGCTTTTCTCGCGGTGCATCCATTTATCGAGGAGTGACAAGGCATCATCAACATGGAAGATGGCAAGCGAGGATTGGAAGAGTTGCAGGCAACAAAGACCTCTACCTCGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAAGCATATGATGTAGCAGCCATCAAATTCAGAGGCCTAAGTGCAGTCACAAACTTTGATATGAGCAGATATGATGTGAAGAGCATCCTTGATAGCAGCACATTACCCATTGGTGGTGCTGCCAAGCGTTTGAAGGAAATTGATCAGCAAGTTGAACAACAACAACAACAACAACAACAACAATTGAGTGTAGTGCAATCAACTGATCATGGAATCATGAGTTTGAGTGATGGAATCAACATTAACAACTATCAACAACATGGTTGGCTTAATAATGCTCTCTCATTCCAACAACCTCAACCTTGTGCTTCCATCCACTACCCTTATGGACAAAAGCTTTGGTGCAAGCAAGAACAAGATTCTGATCATCATGTCTCTCACACTTTTCAAGATACTCACAATTTCTTTCAGTCAAATTCTGGTTTGCAAAGTTTCATGAGCTTGGATAATTCTGCTTCAATGGATAATAGTTCAGGATCTTATGGAGGGGATCATGGTAATGGTTATGGTGGTGGTGGGGGCTATATGATTCCCATGGGAACAACTAGTACTACTAGTGTTATTGGAATTGATGATGTTGACCAAAGTCAAAGAAGCAATGGTTTTGGTGAAAGTTATGAAAGTGTTTATGGAACTTCTACTACTGATCCTTATCATGCAATACATGCAAGGAACTTGTACTATCAACAACAACAAACATGTGTTGATCAAGCCCCCACTTGGGTTCCAACTGCAATTCCAGCAAGGCCTACCAATATGGTTCTCTACCAATATGATCAATAG 2070 0.4367 MASMNLLGFSLSPQEHPSTQDQTVVASRFGFNPHDHGISDVQRDCFDLPSDSSTHSFNQLPPFALYQEEPFHRNTNINTTQDWKENYNNPSLLLGTSCNNQNVNNNHHNQQQQPKLENFLGRHSFGDHDQTYGGNSASADYMFPNCSLQLPAESQTQPEAAGAIGGGTSDSHLHSNGASNSIGLSMIKSWLRNQPLQSDNNINTDSNNNENGGSGATRVQSLSLSMSTGSQSSSSLPLLTANVSGESSSSENKQPPATTVAVLDSTQTVPAAETVQRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARSYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILDSSTLPIGGAAKRLKEIDQQVEQQQQQQQQQLSVVQSTDHGIMSLSDGININNYQQHGWLNNALSFQQPQPCASIHYPYGQKLWCKQEQDSDHHVSHTFQDTHNFFQSNSGLQSFMSLDNSASMDNSSGSYGGDHGNGYGGGGGYMIPMGTTSTTSVIGIDDVDQSQRSNGFGESYESVYGTSTTDPYHAIHARNLYYQQQQTCVDQAPTWVPTAIPARPTNMVLYQYDQ* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2988 689 Coils Coil 466 490 - -
Lja1g2988 689 Gene3D AP2/ERF domain 289 357 IPR036955 GO:0003700|GO:0006355
Lja1g2988 689 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700|GO:0006355
Lja1g2988 689 SUPERFAMILY DNA-binding domain 390 451 IPR016177 GO:0003677
Lja1g2988 689 MobiDBLite consensus disorder prediction 153 177 - -
Lja1g2988 689 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 593 - -
Lja1g2988 689 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 593 - -
Lja1g2988 689 SUPERFAMILY DNA-binding domain 288 357 IPR016177 GO:0003677
Lja1g2988 689 Pfam AP2 domain 391 441 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 Pfam AP2 domain 289 347 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 PRINTS Ethylene responsive element binding protein signature 290 301 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 PRINTS Ethylene responsive element binding protein signature 431 451 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 MobiDBLite consensus disorder prediction 196 257 - -
Lja1g2988 689 SMART rav1_2 289 361 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 SMART rav1_2 391 455 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 ProSiteProfiles AP2/ERF domain profile. 289 355 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 CDD AP2 390 451 IPR001471 GO:0003700|GO:0006355
Lja1g2988 689 CDD AP2 288 357 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2988 Lja-Chr1 36299030 36303240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2988 114 611 AP2-EREBP Transcription Factor Family AT5G17430 48.733 2.96e-135 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja1g2988 AP2 9.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2988 K09285 - gmx:100797584 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2988 1 36299030 36303240 Lja1g2988 1 36299030 36303240 ECH