Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2981 ATGTGCTCTAAAACCTTGTCCTTCTTCTCCCTCTACCGCCACTTTTCAATCTCTACCATCCTCCGAAAGATCCCCATCAGGCACAGAAACCTTGCTGTTCATGAAGCACAGAAGGCTCTCACAGACTACCTCCACGCCACCAGGTCCTTCCCCTTCACCTACGCAGAGCTCATCGGGAACAACACCCTCTGTTCCCTCTCCAATCTCATTGCAAAGGTAGAATTTTCACCCTCCACCTTCTCCAAAAGCTTTCAGAGGGTCCTCAGGTACCACCCCATTAACGAGTTTGAAGTCTTTTTCGAAAGCATAGGCATAGAGCACCACCTGGTTTCTGGGTTGTTGCCTGATGACAAGGTTTTCTTTTCTCAAGATAGGAGCCTCTTTGATGCTGCATGTGCACTTTCTGATTTTGGGTTTCCCTGGGAGAAGTTGGGTGTGTTGTACTTGCAAGAAAGTTCCATTTTTGGGAGGAGTGCTGCAGAGTTGAAATCAAGGCTTGGTGAGCTTAAGGGGTTTGGTTTTGGTAATGTTGAAGTCATTGGCATGTGTTTGGCTTTCCCTTTTGTTTTGAGTGAGGAAAGCCAAGAGGGTGTTGGAATTGATGAATTGTTTAGTGATTTAAAGTTGATATTTTTGGATTTTGGTCTGGGAAGGTTTGTTGAGGGAGATGTTGATTCTTGGCATGAGGTGTGTAGAAAATTGAGATTGTTCATTGATTTAATTGGCTATAAGGGAAACTTATGGGAATACATAGGACGGAATAAGTACAAGAGTATCTTCATTGAATACAGAGAGGAGGAGTTAGTTAATAAAGTCAAGTTTTTCTGTAGGTTTGGTGTAAAGAAGGAGGAAGTGGCTCAGTTGATTCTACTATGTCCAGAATTGTTGAGTCTTGATTTGGAGAACCCGGTGATTAATGTATTGAAGCTATTGAAACACTTTGGTCTGAGTTCTAAAGATTTGGACGAAATTAGTCAAAAATTTGCTCATGTGTTGGGAAGAAACAAATTGGTTAACCTGCCGAATGTAATGAGGGCTTTAGGCTTACAAGAGTGGTTCTTCGATAAAATCAATGGCGGACATCATCAGTTGTTAACGGATTATATCGCAAAGTATCCTAATGAGGACCAGGATAAGGATTATCAAGATGGCCTAAGGAGAATTCAGATTTCAAGAGCCCGAGTTCATAGCATTAGTAAACTAAAGTTCTTGCATGGCTTGGGCTTTGGAGAAAATGCTTTAACTATAGATGTTTTGAATCATTTGCATGGTACTAGTAGTGAGTTACAGGAAAGATTTGACTGCCTTCTATGCTCAAGGATTGAATTCTCAAAGCTCTGTATGATGGTAAGGAGGACACCAAGGATTCTGAATCAAAACTCGGAAACAATAAAACGGAAGAAATCAGGAAATTGA 1416 0.4131 MCSKTLSFFSLYRHFSISTILRKIPIRHRNLAVHEAQKALTDYLHATRSFPFTYAELIGNNTLCSLSNLIAKVEFSPSTFSKSFQRVLRYHPINEFEVFFESIGIEHHLVSGLLPDDKVFFSQDRSLFDAACALSDFGFPWEKLGVLYLQESSIFGRSAAELKSRLGELKGFGFGNVEVIGMCLAFPFVLSEESQEGVGIDELFSDLKLIFLDFGLGRFVEGDVDSWHEVCRKLRLFIDLIGYKGNLWEYIGRNKYKSIFIEYREEELVNKVKFFCRFGVKKEEVAQLILLCPELLSLDLENPVINVLKLLKHFGLSSKDLDEISQKFAHVLGRNKLVNLPNVMRALGLQEWFFDKINGGHHQLLTDYIAKYPNEDQDKDYQDGLRRIQISRARVHSISKLKFLHGLGFGENALTIDVLNHLHGTSSELQERFDCLLCSRIEFSKLCMMVRRTPRILNQNSETIKRKKSGN* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2981 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 18 467 - -
Lja1g2981 471 Gene3D Transcription termination factor 3, mitochondrial 265 469 IPR038538 -
Lja1g2981 471 PANTHER CGI-12 PROTEIN-RELATED 18 467 IPR003690 GO:0003690|GO:0006355
Lja1g2981 471 Gene3D Transcription termination factor 3, mitochondrial 61 211 IPR038538 -
Lja1g2981 471 Pfam mTERF 262 339 IPR003690 GO:0003690|GO:0006355
Lja1g2981 471 SMART mt_12 253 281 IPR003690 GO:0003690|GO:0006355
Lja1g2981 471 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Lja1g2981 471 SMART mt_12 145 175 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2981 Lja-Chr1 36211731 36213922 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja1g2981 mTERF 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2981 - - lja:Lj1g3v2862750.1 940.643