Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2977 ATGGCTTCGTTGTCTGCAAGTTTGAACTCTGTTGCCAGCCTTTGCAGTGGAAGAGACACATGGAGGATTAAGGTCCGTGTTGTTAGGATGTGGGAGATGTGCCCTATTTCTGAGCCAGGGAAGCCATTTGCTGTCCAGATGGTGTTAATTGATGCTGAGGGACAGAGAATTGAGGCTACTATCATAAAATCCCTCATAAGGAAGCTGTTTGGTGAGATTGTTGAGGGAAACATATACAAGATTACCTATTTTTCTGTGGTCCCTAACCTTGGAGTCTACAAGGCTGCTAAACATGAATTCAAGATCATTTTTAATAGCAGGACAAAAATAGTGCCTGAGGAGTCAGATCTCATTCCTTTGTATGGATTTGATTTCATGAACTCAGCTGAAATTGCTCACACCAACGGTGAATCTGAAAATCTCATTGATGTGATAGGCTTGGTGACTGCAGTTTCCCGCGAGAAACAATACACCAAAGGTGCAAATATCACAAGGATGATCGAGCTCCAATTGATTGATGATAGGGGCAGTGTCCAGTGTACCTTTTTTGGAAGCTATGTTGACGTTGTTACTCATCATGTACAAGAGGATCGACAAGCTATGCCTGTGGTTGTTGTCAAGTTTGCTAAGATTAAGACATTCAAAGGAGATTTTGTGCTTCAAAATGTTATGCATGCTACCAGGATTCTCTGGAATCCTGAAATTCCTGAGGTGCTTGCTTTCCGCAATAGGTTGATGCTCCACCGTCGGAAGCTACTAAATATTTGA 768 0.4232 MASLSASLNSVASLCSGRDTWRIKVRVVRMWEMCPISEPGKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVPEESDLIPLYGFDFMNSAEIAHTNGESENLIDVIGLVTAVSREKQYTKGANITRMIELQLIDDRGSVQCTFFGSYVDVVTHHVQEDRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRNRLMLHRRKLLNI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2977 255 Pfam Domain of unknown function DUF223 47 112 IPR003871 -
Lja1g2977 255 Pfam Replication protein A OB domain 135 217 IPR031657 -
Lja1g2977 255 PANTHER REPLICATION FACTOR A 1, RFA1 11 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g2977 255 Gene3D - 117 251 IPR012340 -
Lja1g2977 255 SUPERFAMILY Nucleic acid-binding proteins 8 114 IPR012340 -
Lja1g2977 255 Gene3D - 8 114 IPR012340 -
Lja1g2977 255 CDD RPA1_DBD_B_like 143 246 - -
Lja1g2977 255 SUPERFAMILY Nucleic acid-binding proteins 123 245 IPR012340 -
Lja1g2977 255 CDD RPA1_DBD_A_like 22 110 - -
Lja1g2977 255 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 11 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2977 Lja-Chr1 36177915 36180657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2977 8 242 Core DNA Replication Machinery Family AT5G45400 29.918 1.38e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2977 - - lja:Lj0g3v0341019.1 499.975